Evidence map›Paper›PMID 37290501›Full record

ArticleMucosal immunology2023

Indoleamine 2,3-dioxygenase 1 regulates cell permissivity to astrovirus infection.

Valerie Cortez, Brandi Livingston, Bridgett Sharp, Virginia Hargest, James B Papizan, Natalie Pedicino, Sarah Lanning, Summer Vaughn Jordan, Jacob Gulman, Peter Vogel and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Mucosal immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Valerie CortezDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA. Electronic address: vccortez@ucsc.edu.
Brandi LivingstonDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Bridgett SharpDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Virginia HargestDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
James B PapizanCenter for Advanced Genome Engineering, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Natalie PedicinoDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA.
Sarah LanningDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA; Department of Biomolecular Engineering, University of California, Santa Cruz, California, USA.
Summer Vaughn JordanDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA.
Jacob GulmanDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA.
Peter VogelVeterinary Pathology Core, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Rebecca M DuBoisDepartment of Biomolecular Engineering, University of California, Santa Cruz, California, USA.
Jeremy Chase CrawfordDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
David F BoydDepartment of Molecular, Cell & Development Biology, University of California, Santa Cruz, USA.
Shondra M Pruett-MillerCenter for Advanced Genome Engineering, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Paul G ThomasDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Stacey Schultz-CherryDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
St. Jude Children's Research Hospital · USUniversity of California, Santa Cruz · US

Funding

Household Respiratory Virus SARS-CoV-2 Transmission and Immunity Sub-Study (HRTS)U01AI144616 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GORDON, AUBREE L, THOMAS, PAUL G. · 2019 to 2025
$43.7M
COMPUTER-AIDED DESIGN OF ANTIHIV DRUGSR01AI044616 · NIAID · YALE UNIVERSITY · PI JORGENSEN, WILLIAM L. · 1999 to 2022
$7.7M
DYNAMICS AND EVOLUTION OF IMMUNE RESPONSES TO INFLUENZA VIRUSESU01AI150747 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, ANTIA, RUSTOM NOSHIR · 2020 to 2024
$5.9M
Immunobiology of Influenza Virus-related Critical Illness in Young HostsR01AI154470 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI RANDOLPH, ADRIENNE G, THOMAS, PAUL G. · 2020 to 2024
$4.7M
Training Program in Molecular, Cell, and Developmental BiologyT32GM133391 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Needhi Bhalla · 2019 to 2026
$3.0M
UC San Diego RAPID Faculty Development Program in Infectious DiseasesR25AI147376 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADRIANA H TREMOULET, Joann Trejo · 2020 to 2026
$2.5M
Structural, mechanistic, and antigenic insights into the human astrovirus capsidR01AI144090 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI DUBOIS, REBECCA MICHELLE · 2019 to 2023
$2.2M
Training in the Design and Development of Infectious Disease TherapeuticsT32AI106700 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Richard E. Lee · 2015 to 2026
$2.1M
Image Processing of Immunological Microscopy SamplesR01AI050747 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI OBER, RAIMUND J · 2002 to 2004
$801k
Do they or don't they: astrovirus-induced diarrheaR21AI135254 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULTZ-CHERRY, STACEY L · 2018 to 2019
$561k
Astrovirus modulation of gut immunity via goblet cellsK22AI156116 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI CORTEZ, VALERIE · 2021 to 2022
$312k
Astrovirus CNS InfectionsR03AI166434 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULTZ-CHERRY, STACEY L · 2022 to 2023
$182k
NIAID NIH HHS K22 AI156116NIAID NIH HHS R01 AI044616NIAID NIH HHS R01 AI050747NIAID NIH HHS R01 AI144090NIAID NIH HHS R01 AI154470NIAID NIH HHS R03 AI166434NIAID NIH HHS R21 AI135254NIAID NIH HHS R25 AI147376NIAID NIH HHS T32 AI106700NIAID NIH HHS U01 AI144616NIAID NIH HHS U01 AI150747NIGMS NIH HHS T32 GM133391
6 · The paper itself

Abstract

Astroviruses cause a spectrum of diseases spanning asymptomatic infections to severe diarrhea, but little is understood about their pathogenesis. We previously determined that small intestinal goblet cells were the main cell type infected by murine astrovirus-1. Here, we focused on the host immune response to infection and inadvertently discovered a role for indoleamine 2,3-dioxygenase 1 (Ido1), a host tryptophan catabolizing enzyme, in the cellular tropism of murine and human astroviruses. We identified that Ido1 expression was highly enriched among infected goblet cells, and spatially corresponded to the zonation of infection. Because Ido1 can act as a negative regulator of inflammation, we hypothesized it could dampen host antiviral responses. Despite robust interferon signaling in goblet cells, as well as tuft cell and enterocyte bystanders, we observed delayed cytokine induction and suppressed levels of fecal lipocalin-2. Although we found Ido

Indexed as

Astroviridae InfectionsIndoleamine-Pyrrole 2,3,-DioxygenaseAnimalsCaco-2 CellsHumansInterferonsMiceTryptophanIDO1 protein, humanIndoleamine-Pyrrole 2,3,-DioxygenaseInterferonsTryptophan

Identifiers

PMID37290501
PMCPMC10528345
OpenAlexW4379618605

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.