Evidence map›Paper›PMID 37289273›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2023

The metabolic contribution of SKN-1/Nrf2 to the lifespan of Caenorhabditis elegans.

Hong-Duc Phan, Tin Tin Manh Nguyen, Sujin Lee, Munjun Seo, Yong Jin An, Arvie Camille V de Guzman

Abstract read
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In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Postbiotic pA1cInternational journal of molecular sciences · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. The Probiotic StrainMicroorganisms · 2024
    Article
  10. Review
  11. [Nan fang yi ke da xue xue bao = Journal of Southern Medical University
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Hong-Duc Phan *College of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea.
Tin Tin Manh Nguyen *College of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea.
Sujin LeeCollege of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea.
Munjun SeoCollege of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea.
Yong Jin AnCollege of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea. biochem.yong@gmail.com.
Arvie Camille V de GuzmanCollege of Pharmacy, Natural Products Research Institute, Seoul National University, Sillim-Dong, Gwanak-Gu, Seoul, 08826, South Korea. arviecamille@snu.ac.kr.
Seoul National University · KR

Funding

National Research Foundation of Korea NRF-2020R1A6A3A01099440
6 · The paper itself

Abstract

BACKGROUND AND

aimsSKN-1, a C. elegans transcription factor analogous to the mammalian NF-E2-related factor (Nrf2), has been known to promote oxidative stress resistance aiding nematodes' longevity. Although SKN-1's functions suggest its implication in lifespan modulation through cellular metabolism, the actual mechanism of how metabolic rearrangements contribute to SKN-1's lifespan modulation has yet to be well characterized. Therefore, we performed the metabolomic profiling of the short-lived skn-1-knockdown C. elegans.

methodsWe analyzed the metabolic profile of the skn-1-knockdown worms with nuclear magnetic resonance (NMR) spectroscopy and liquid chromatography-tandem mass spectrometry (LC-MS/MS) and obtained distinctive metabolomic profiles compared to WT worms. We further extended our study with gene expression analysis to examine the expression level of genes encoding all metabolic enzymes.

resultsA significant increase in the phosphocholine and AMP/ATP ratio, potential biomarkers of aging, was observed, accompanied by a decrease in the transsulfuration metabolites, NADPH/NADP

conclusionOur multi-omics results consistently revealed that the cytoprotective mechanisms, including cellular redox reactions and xenobiotic detoxification system, contribute to the roles of SKN-1/Nrf2 in the lifespan of worms.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAcetaminophenAnimalsChromatography, LiquidDNA-Binding ProteinsGlutathioneLongevityMammalsMetabolomicsNADPNF-E2-Related Factor 2Tandem Mass SpectrometryTranscription FactorsAcetaminophenCaenorhabditis elegans ProteinsDNA-Binding ProteinsGlutathioneNADPNF-E2-Related Factor 2skn-1 protein, C elegansTranscription Factors13C-labelingCaenorhabditis elegansHSQCMetabolomicsParacetamolPhase II detoxification

Identifiers

PMID37289273
OpenAlexW4379769485

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.