Evidence map›Paper›PMID 37289025›Full record

ArticleCancer research2023

The Genomic and Epigenomic Landscape of Double-Negative Metastatic Prostate Cancer.

Arian Lundberg, Meng Zhang, Rahul Aggarwal, Haolong Li, Li Zhang, Adam Foye, Martin Sjöström, Jonathan Chou, Kevin Chang, Thaidy Moreno-Rodriguez and 18 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 64 citations in OpenAlex.

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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 2 countries.

Arian LundbergHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-6630-2787
Meng ZhangHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0003-1042-6294
Rahul AggarwalHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0001-7003-7982
Haolong LiHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-8628-9698
Li ZhangHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-3617-2627
Adam FoyeHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-9910-9836
Martin SjöströmHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-2629-9966
Jonathan ChouHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0003-1258-0391
Kevin ChangHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0001-6227-6430
Thaidy Moreno-RodriguezHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0003-3588-3889
Raunak ShresthaHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-1144-1413
Avi BaskinHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-1016-2025
Xiaolin ZhuHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-3221-595X
Alana S WeinsteinHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-1563-9072
Noah YoungerHelen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0001-5536-6999
Joshi J AlumkalDivision of Hematology and Oncology, University of Michigan Rogel Cancer Center, Ann Arbor, Michigan.ORCID 0000-0003-1278-0166
Tomasz M BeerKnight Cancer Institute, Oregon Health and Science University, Portland, Oregon.ORCID 0000-0001-5600-9993
Kim N ChiVancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-3782-7226
Christopher P EvansComprehensive Cancer Center, University of California Davis, Sacramento, California.ORCID 0000-0001-5626-8901
Martin GleaveVancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0003-4235-0167
Primo N LaraComprehensive Cancer Center, University of California Davis, Sacramento, California.ORCID 0000-0001-9512-0002
Rob E ReiterDepartments of Medicine, Hematology/Oncology and Urology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California.ORCID 0000-0002-7962-3985
Matthew B RettigDepartments of Medicine, Hematology/Oncology and Urology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California.ORCID 0000-0002-7394-3056
Owen N WitteDepartment of Microbiology, Immunology, and Molecular Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California.ORCID 0000-0003-4461-4533
Alexander W WyattVancouver Prostate Centre, Department of Urologic Sciences, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0003-2399-0329
Felix Y Feng *Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-0963-7687
Eric J Small *Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0003-3191-6268
David A Quigley *Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-4726-1473
University of California, San Francisco · USUniversity of British Columbia · CAUniversity of California, Los Angeles · USMichigan Medicine · USOregon Health & Science University · USUniversity of California, Davis · USUniversity of California Davis Medical Center · US

Funding

Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Leigh Clarke · 1999 to 2026
$209.7M
Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Timothy Dess · 2014 to 2026
$27.6M
Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
Molecular Mechanisms of Castration Resistant Prostate Cancer Recurrence & Therapeutic StrategiesR01CA227025 · NCI · WASHINGTON UNIVERSITY · PI FENG, FELIX YI-CHUNG, MAHAJAN, NUPAM P · 2019 to 2023
$2.8M
DNA repair alterations in metastatic prostate cancer: functional and therapeutic implicationsR01CA230516 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHWORTH, ALAN, FENG, FELIX YI-CHUNG · 2018 to 2022
$2.7M
Targeting Prostate Cancer Lineage Plasticity with BET Bromodomain InhibitionR01CA251245 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALUMKAL, JOSHI JAMES · 2020 to 2024
$1.9M
NCI NIH HHS P30 CA082103NCI NIH HHS P30 CA093373NCI NIH HHS P50 CA186786NCI NIH HHS R01 CA227025NCI NIH HHS R01 CA230516NCI NIH HHS R01 CA251245NCI NIH HHS T32 CA108462
6 · The paper itself

Abstract

Systemic targeted therapy in prostate cancer is primarily focused on ablating androgen signaling. Androgen deprivation therapy and second-generation androgen receptor (AR)-targeted therapy selectively favor the development of treatment-resistant subtypes of metastatic castration-resistant prostate cancer (mCRPC), defined by AR and neuroendocrine (NE) markers. Molecular drivers of double-negative (AR-/NE-) mCRPC are poorly defined. In this study, we comprehensively characterized treatment-emergent mCRPC by integrating matched RNA sequencing, whole-genome sequencing, and whole-genome bisulfite sequencing from 210 tumors. AR-/NE- tumors were clinically and molecularly distinct from other mCRPC subtypes, with the shortest survival, amplification of the chromatin remodeler CHD7, and PTEN loss. Methylation changes in CHD7 candidate enhancers were linked to elevated CHD7 expression in AR-/NE+ tumors. Genome-wide methylation analysis nominated Krüppel-like factor 5 (KLF5) as a driver of the AR-/NE- phenotype, and KLF5 activity was linked to RB1 loss. These observations reveal the aggressiveness of AR-/NE- mCRPC and could facilitate the identification of therapeutic targets in this highly aggressive disease. SIGNIFICANCE: Comprehensive characterization of the five subtypes of metastatic castration-resistant prostate cancer identified transcription factors that drive each subtype and showed that the double-negative subtype has the worst prognosis.

Indexed as

Neuroendocrine TumorsProstatic Neoplasms, Castration-ResistantAndrogen AntagonistsAndrogensEpigenomicsGenomicsHumansMaleReceptors, AndrogenAndrogen AntagonistsAndrogensReceptors, Androgen

Identifiers

PMID37289025
PMCPMC10425725
OpenAlexW4379768595

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.