Evidence map›Paper›PMID 37287715›Full record

ArticleFrontiers in plant science2023

Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut.

Vinay Sharma, Sunil S Gangurde, Spurthi N Nayak, Anjan S Gowda, B S Sukanth, Supriya S Mahadevaiah, Surendra S Manohar, Rakeshkumar S Choudhary, T Anitha, Sachin S Malavalli and 8 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Impact of heat stress on physiological characteristics and expression of heat shock proteins (HSPs) in groundnut (Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  6. Designing future peanut: the power of genomics-assisted breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Vinay SharmaCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Sunil S GangurdeCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Spurthi N NayakDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
Anjan S GowdaDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
B S SukanthDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
Supriya S MahadevaiahDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
Surendra S ManoharCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Rakeshkumar S ChoudharyDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
T AnithaRegional Agricultural Research Station, Acharya N G Ranga Agricultural University (ANGRAU), Tirupati, India.
Sachin S MalavalliDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
S N SrikanthDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
Prasad BajajCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Shailendra SharmaDepartment of Genetics and Plant Breeding, Chaudhary Charan Singh University (CCSU), Meerut, India.
Rajeev K VarshneyCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Putta LathaRegional Agricultural Research Station, Acharya N G Ranga Agricultural University (ANGRAU), Tirupati, India.
Pasupuleti JanilaCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
Ramesh S BhatDepartment of Biotechnology, University of Agricultural Sciences, Dharwad, India.
Manish K PandeyCenter of Excellence in Genomics & Systems Biology (CEGSB), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India.
University of Agricultural Sciences, Dharwad · INInternational Crops Research Institute for the Semi-Arid Tropics · INAcharya N. G. Ranga Agricultural University · INChaudhary Charan Singh University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Groundnut productivity and quality have been impeded by rising temperatures in semi-arid environments. Hence, understanding the effects and molecular mechanisms of heat stress tolerance will aid in tackling yield losses. In this context, a recombinant inbred line (RIL) population was developed and phenotyped for eight seasons at three locations for agronomic, phenological, and physiological traits under heat stress. A genetic map was constructed using genotyping-by-sequencing with 478 single-nucleotide polymorphism (SNP) loci spanning a map distance of 1,961.39 cM. Quantitative trait locus (QTL) analysis using phenotypic and genotypic data identified 45 major main-effect QTLs for 21 traits. Intriguingly, three QTL clusters (Cluster-1-Ah03, Cluster-2-Ah12, and Cluster-3-Ah20) harbor more than half of the major QTLs (30/45, 66.6%) for various heat tolerant traits, explaining 10.4%-38.6%, 10.6%-44.6%, and 10.1%-49.5% of phenotypic variance, respectively. Furthermore, important candidate genes encoding

Indexed as

candidate genegenomic regionsgenotyping by sequencingheat stress — tolerance — molecular markers — QTLpeanut

Identifiers

PMID37287715
PMCPMC10243373
OpenAlexW4378085990

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.