Evidence map›Paper›PMID 37286962›Full record

ArticleBMC plant biology2023

Cytosine base editors (CBEs) for inducing targeted DNA base editing in Nicotiana benthamiana.

Juan Luo, Muhammad Abid, Jing Tu, Xinxia Cai, Yi Zhang, Puxin Gao, Hongwen Huang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Juan LuoLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Muhammad AbidLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Jing TuLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Xinxia CaiLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Yi ZhangLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Puxin GaoLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China.
Hongwen HuangLushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, 332900, China. huanghw@scbg.ac.cn.
Lushan Botanical Garden · CNNanchang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe base editors can introduce point mutations accurately without causing double-stranded DNA breaks or requiring donor DNA templates. Previously, cytosine base editors (CBEs) containing different deaminases are reported for precise and accurate base editing in plants. However, the knowledge of CBEs in polyploid plants is inadequate and needs further exploration.

resultsIn the present study, we constructed three polycistronic tRNA-gRNA expression cassettes CBEs containing A3A, A3A (Y130F), and rAPOBEC1(R33A) to compare their base editing efficiency in allotetraploid N. benthamiana (n = 4x). We used 14 target sites to compare their editing efficiency using transient transformation in tobacco plants. The sanger sequencing and deep sequencing results showed that A3A-CBE was the most efficient base editor. In addition, the results showed that A3A-CBE provided most comprehensive editing window (C

conclusionsAll in all, we conclude that A3A-CBE is the most suitable vector for specific C to T conversion in N. benthamiana. Current findings will provide valuable insights into selecting an appropriate base editor for breeding polyploid plants.

Indexed as

Gene EditingNicotianaCRISPR-Cas SystemsCytosineDNAPlant BreedingPlantsPolyploidyCytosineDNAA3AA3A(Y130F)CRISPRCytosine base editorPolyploid plantsrAPOBEC1(R33A)

Identifiers

PMID37286962
PMCPMC10245509
OpenAlexW4379648150

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.