Evidence map›Paper›PMID 37284846›Full record

ArticleHistochemistry and cell biology2023

Online citizen science with the Zooniverse for analysis of biological volumetric data.

Patricia Smith, Oliver N F King, Avery Pennington, Win Tun, Mark Basham, Martin L Jones, Lucy M Collinson, Michele C Darrow, Helen Spiers

Abstract read
In one paragraph

Article in Histochemistry and cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Communities in structural biology.Nature structural & molecular biology · 2024
    Article
  4. In focus: data management and data analysis in microscopy.Histochemistry and cell biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Patricia SmithThe Rosalind Franklin Institute, Harwell Campus, Fermi Avenue, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0001-6790-3202
Oliver N F KingDiamond Light Source, Harwell Campus, Fermi Avenue, Didcot, OX11 0DE, UK.ORCID http://orcid.org/0000-0002-6152-7207
Avery PenningtonThe Rosalind Franklin Institute, Harwell Campus, Fermi Avenue, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0002-1179-4243
Win TunDiamond Light Source, Harwell Campus, Fermi Avenue, Didcot, OX11 0DE, UK.ORCID http://orcid.org/0000-0003-0991-8785
Mark BashamThe Rosalind Franklin Institute, Harwell Campus, Fermi Avenue, Didcot, OX11 0FA, UK.ORCID http://orcid.org/0000-0002-8438-1415
Martin L JonesThe Francis Crick Institute, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0003-0994-5652
Lucy M CollinsonThe Francis Crick Institute, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0003-0260-613X
Michele C DarrowThe Rosalind Franklin Institute, Harwell Campus, Fermi Avenue, Didcot, OX11 0FA, UK. michele.darrow@rfi.ac.uk.ORCID http://orcid.org/0000-0001-6259-1684
Helen SpiersThe Francis Crick Institute, London, NW1 1AT, UK. bowerssh@crick.ac.uk.ORCID http://orcid.org/0000-0001-7748-7935

Funding

Cancer Research UK CC0199Wellcome Trust 212980/Z/18/ZWellcome Trust CC0199
6 · The paper itself

Abstract

Public participation in research, also known as citizen science, is being increasingly adopted for the analysis of biological volumetric data. Researchers working in this domain are applying online citizen science as a scalable distributed data analysis approach, with recent research demonstrating that non-experts can productively contribute to tasks such as the segmentation of organelles in volume electron microscopy data. This, alongside the growing challenge to rapidly process the large amounts of biological volumetric data now routinely produced, means there is increasing interest within the research community to apply online citizen science for the analysis of data in this context. Here, we synthesise core methodological principles and practices for applying citizen science for analysis of biological volumetric data. We collate and share the knowledge and experience of multiple research teams who have applied online citizen science for the analysis of volumetric biological data using the Zooniverse platform ( www.zooniverse.org ). We hope this provides inspiration and practical guidance regarding how contributor effort via online citizen science may be usefully applied in this domain.

Indexed as

Citizen ScienceCommunity ParticipationHumansCell biologyCellular imagingCitizen scienceCrowdsourcingImage classificationImage processingMachine learningSegmentationVolume electron microscopy

Identifiers

PMID37284846
PMCPMC10245346

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.