Evidence map›Paper›PMID 37283924›Full record

ArticleFrontiers in microbiology2023

Expression profile of HERVs and inflammatory mediators detected in nasal mucosa as a predictive biomarker of COVID-19 severity.

Vita Petrone, Marialaura Fanelli, Martina Giudice, Nicola Toschi, Allegra Conti, Christian Maracchioni, Marco Iannetta, Claudia Resta, Chiara Cipriani, Martino Tony Miele and 12 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 19 citations in OpenAlex.

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  15. Human endogenous retroviruses and exogenous viral infections.Frontiers in cellular and infection microbiology · 2024
    Review
  16. Fullerenol CInternational journal of nanomedicine · 2024
    Article
  17. Exosomes and SARS-CoV-2 infection.Frontiers in immunology · 2024
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Vita PetroneDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Marialaura FanelliDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Martina GiudiceDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Nicola ToschiDepartment of Biomedicine and Prevention, University of Rome Tor Vergata, Rome, Italy.
Allegra ContiDepartment of Biomedicine and Prevention, University of Rome Tor Vergata, Rome, Italy.
Christian MaracchioniDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Marco IannettaDepartment of Systems Medicine, University of Rome Tor Vergata, Rome, Italy.
Claudia RestaRespiratory Medicine Unit, Policlinic of Tor Vergata, Rome, Italy.
Chiara CiprianiDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Martino Tony MieleDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Francesca AmatiDepartment of Biomedicine and Prevention, University of Rome Tor Vergata, Rome, Italy.
Massimo AndreoniDepartment of Systems Medicine, University of Rome Tor Vergata, Rome, Italy.
Loredana SarmatiDepartment of Systems Medicine, University of Rome Tor Vergata, Rome, Italy.
Paola RoglianiRespiratory Medicine Unit, Policlinic of Tor Vergata, Rome, Italy.
Giuseppe NovelliDepartment of Biomedicine and Prevention, University of Rome Tor Vergata, Rome, Italy.
Enrico GaraciIRCCS San Raffaele Pisana, Rome, Italy.
Guido RasiDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Paola Sinibaldi-VallebonaDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Antonella MinutoloDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Claudia MatteucciDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Emanuela BalestrieriDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
Sandro GrelliDepartment of Experimental Medicine, University of Rome Tor Vergata, Rome, Italy.
University of Rome Tor Vergata · ITPoliclinico Tor Vergata · ITHarvard University · USIRCCS Ospedale San Raffaele · ITIstituto di Farmacologia Traslazionale · ITUniversity of Nevada, Reno · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Our research group and others demonstrated the implication of the human endogenous retroviruses (HERVs) in SARS-CoV-2 infection and their association with disease progression, suggesting HERVs as contributing factors in COVID-19 immunopathology. To identify early predictive biomarkers of the COVID-19 severity, we analyzed the expression of HERVs and inflammatory mediators in SARS-CoV-2-positive and -negative nasopharyngeal/oropharyngeal swabs with respect to biochemical parameters and clinical outcome. Methods: Residuals of swab samples (20 SARS-CoV-2-negative and 43 SARS-CoV-2-positive) were collected during the first wave of the pandemic and expression levels of HERVs and inflammatory mediators were analyzed by qRT-Real time PCR. Results: The results obtained show that infection with SARS-CoV-2 resulted in a general increase in the expression of HERVs and mediators of the immune response. In particular, SARS-CoV-2 infection is associated with increased expression of HERV-K and HERV-W, IL-1β, IL-6, IL-17, TNF-α, MCP-1, INF-γ, TLR-3, and TLR-7, while lower levels of IL-10, IFN-α, IFN-β, and TLR-4 were found in individuals who underwent hospitalization. Moreover, higher expression of HERV-W, IL-1β, IL-6, IFN-α, and IFN-β reflected the respiratory outcome of patients during hospitalization. Interestingly, a machine learning model was able to classify hospitalized Discussion: Overall, the present results suggest HERVs as contributing elements in COVID-19 and early genomic biomarkers to predict COVID-19 severity and disease outcome.

Indexed as

biomarkerCOVID-19HERVhuman endogenous retrovirusesinflammationrespiratory outcome

Identifiers

PMID37283924
PMCPMC10239953
OpenAlexW4377290587

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.