Evidence map›Paper›PMID 37282749›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2023

Epigenetic Regulation of Hepatic Lipid Metabolism by DNA Methylation.

Shirong Wang, Lin Zha, Xin Cui, Yu-Te Yeh, Ruochuan Liu, Jia Jing, Huidong Shi, Weiping Chen, John Hanover, Jun Yin and 3 more

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Shirong WangDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.
Lin ZhaDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.
Xin CuiDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.
Yu-Te YehDepartment of Internal Medicine, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Ruochuan LiuDepartment of Chemistry and the Center for Diagnosis and Therapeutics, Georgia State University, Atlanta, GA, 30303.
Jia JingDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.
Huidong ShiGRU Cancer Center and Department of Biochemistry and Molecular Biology, Medical College of Georgia, Augusta University, Augusta, GA, 30912, USA.
Weiping ChenGenomic Core Lab of National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20855, USA.
John HanoverGenomic Core Lab of National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20855, USA.
Jun YinDepartment of Chemistry and the Center for Diagnosis and Therapeutics, Georgia State University, Atlanta, GA, 30303.
Liqing YuDepartment of Internal Medicine, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Bingzhong XueDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.
Hang ShiDepartment of Biology, Georgia State University, Atlanta, GA, 30303, USA.ORCID 0000-0001-6472-3302
Georgia State University · USUniversity of Maryland, Baltimore · USNational Institutes of Health · US

Funding

Orthogonal Ubiquitin Transfer to Profile E3 Substrate Specificity.R01GM104498 · NIGMS · UNIVERSITY OF CHICAGO · PI KIYOKAWA, HIROAKI, YIN, JUN · 2013 to 2021
$3.2M
HDAC1 as a nutrient sensor in the development and progression of NAFLDR01DK130342 · NIDDK · GEORGIA STATE UNIVERSITY · PI Hang Shi, Liqing Yu · 2022 to 2026
$2.8M
Crosstalk between sensory ghrelin signaling and adipose tissue sympathetic outflow regulates metabolic homeostasisR01DK125081 · NIDDK · GEORGIA STATE UNIVERSITY · PI XUE, BINGZHONG · 2020 to 2023
$2.3M
The Role of Adipocyte Lipolysis in ThermoregulationR01DK116496 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI YU, LIQING · 2018 to 2022
$1.8M
Epigenetic regulation of brown fat thermogenesis by the histone demethylase KDM6AR01DK118106 · NIDDK · GEORGIA STATE UNIVERSITY · PI SHI, HANG, XUE, BINGZHONG · 2019 to 2022
$1.7M
HDAC1 regulates thermogenic program via H3K27 deacetylationR01DK115740 · NIDDK · GEORGIA STATE UNIVERSITY · PI SHI, HANG · 2018 to 2021
$1.5M
Cellular and Molecular Mechanisms of Fatty Liver DiseaseR01DK111052 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI YU, LIQING · 2016 to 2019
$1.4M
Epigenetic programming of beta-klotho in non-alcoholic fatty liver diseaseR01DK116806 · NIDDK · GEORGIA STATE UNIVERSITY · PI SHI, HANG · 2018 to 2021
$1.4M
NIDDK NIH HHS R01 DK111052NIDDK NIH HHS R01 DK115740NIDDK NIH HHS R01 DK116496NIDDK NIH HHS R01 DK116806NIDDK NIH HHS R01 DK118106NIDDK NIH HHS R01 DK125081NIDDK NIH HHS R01 DK130342NIGMS NIH HHS R01 GM104498NIH HHS DK116496NIH HHS R01DK111052NIH HHS R01DK115740NIH HHS R01DK116806NIH HHS R01DK118106NIH HHS R01DK125081NIH HHS R01DK130342NIH HHS R01GM104498
6 · The paper itself

Abstract

While extensive investigations have been devoted to the study of genetic pathways related to fatty liver diseases, much less is known about epigenetic mechanisms underlying these disorders. DNA methylation is an epigenetic link between environmental factors (e.g., diets) and complex diseases (e.g., non-alcoholic fatty liver disease). Here, it is aimed to study the role of DNA methylation in the regulation of hepatic lipid metabolism. A dynamic change in the DNA methylome in the liver of high-fat diet (HFD)-fed mice is discovered, including a marked increase in DNA methylation at the promoter of Beta-klotho (Klb), a co-receptor for the biological functions of fibroblast growth factor (FGF)15/19 and FGF21. DNA methyltransferases (DNMT) 1 and 3A mediate HFD-induced methylation at the Klb promoter. Notably, HFD enhances DNMT1 protein stability via a ubiquitination-mediated mechanism. Liver-specific deletion of Dnmt1 or 3a increases Klb expression and ameliorates HFD-induced hepatic steatosis. Single-nucleus RNA sequencing analysis reveals pathways involved in fatty acid oxidation in Dnmt1-deficient hepatocytes. Targeted demethylation at the Klb promoter increases Klb expression and fatty acid oxidation, resulting in decreased hepatic lipid accumulation. Up-regulation of methyltransferases by HFD may induce hypermethylation of the Klb promoter and subsequent down-regulation of Klb expression, resulting in the development of hepatic steatosis.

Indexed as

Fatty LiverLipid MetabolismAnimalsDNA MethylationEpigenesis, GeneticFatty AcidsMiceFatty AcidsDNA methylationepigeneticshepatic steatosis

Identifiers

PMID37282749
PMCPMC10369300
OpenAlexW4379600233

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.