Evidence map›Paper›PMID 37278764›Full record

ArticleThe Journal of cell biology2023

Ultrafast single-molecule imaging reveals focal adhesion nano-architecture and molecular dynamics.

Takahiro K Fujiwara, Taka A Tsunoyama, Shinji Takeuchi, Ziya Kalay, Yosuke Nagai, Thomas Kalkbrenner, Yuri L Nemoto, Limin H Chen, Akihiro C E Shibata, Kokoro Iwasawa and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

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  6. The role and regulation of integrins in cell migration and invasion.Nature reviews. Molecular cell biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Takahiro K FujiwaraInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0000-0001-5576-759X
Taka A TsunoyamaMembrane Cooperativity Unit, Okinawa Institute of Science and Technology Graduate University (OIST) , Okinawa, Japan.ORCID 0000-0003-1457-7612
Shinji TakeuchiPhotron Limited , Tokyo, Japan.ORCID 0009-0005-7666-3649
Ziya KalayInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0000-0003-4103-1623
Yosuke NagaiPhotron Limited , Tokyo, Japan.ORCID 0009-0009-5388-2581
Thomas KalkbrennerCarl Zeiss Microscopy GmbH , Jena, Germany.ORCID 0009-0002-6903-7947
Yuri L NemotoMembrane Cooperativity Unit, Okinawa Institute of Science and Technology Graduate University (OIST) , Okinawa, Japan.ORCID 0000-0001-6159-3709
Limin H ChenMembrane Cooperativity Unit, Okinawa Institute of Science and Technology Graduate University (OIST) , Okinawa, Japan.ORCID 0000-0001-5766-1350
Akihiro C E ShibataInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0000-0003-1394-7220
Kokoro IwasawaInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0009-0003-5961-0380
Ken P RitchieDepartment of Physics and Astronomy , Purdue University, West Lafayette, IN, USA.ORCID 0000-0002-8445-6042
Kenichi G N SuzukiInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0000-0002-8436-5757
Akihiro KusumiInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University , Kyoto, Japan.ORCID 0000-0002-9558-6950
Kyoto University · JPOkinawa Institute of Science and Technology Graduate University · JPCarl Zeiss (Germany) · DEPurdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using our newly developed ultrafast camera described in the companion paper, we reduced the data acquisition periods required for photoactivation/photoconversion localization microscopy (PALM, using mEos3.2) and direct stochastic reconstruction microscopy (dSTORM, using HMSiR) by a factor of ≈30 compared with standard methods, for much greater view-fields, with localization precisions of 29 and 19 nm, respectively, thus opening up previously inaccessible spatiotemporal scales to cell biology research. Simultaneous two-color PALM-dSTORM and PALM-ultrafast (10 kHz) single fluorescent-molecule imaging-tracking has been realized. They revealed the dynamic nanoorganization of the focal adhesion (FA), leading to the compartmentalized archipelago FA model, consisting of FA-protein islands with broad diversities in size (13-100 nm; mean island diameter ≈30 nm), protein copy numbers, compositions, and stoichiometries, which dot the partitioned fluid membrane (74-nm compartments in the FA vs. 109-nm compartments outside the FA). Integrins are recruited to these islands by hop diffusion. The FA-protein islands form loose ≈320 nm clusters and function as units for recruiting FA proteins.

Indexed as

Focal AdhesionsMolecular Dynamics SimulationCell BiologyDiffusionIntegrinsSingle Molecule ImagingIntegrins

Identifiers

PMID37278764
PMCPMC10244807
OpenAlexW4379508091

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.