Evidence map›Paper›PMID 37278719›Full record

ArticleMicrobial genomics2023

Nicholas Noll, Marco Molari, Liam P Shaw, Richard A Neher

Abstract read
In one paragraph

Article in Microbial genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Comparative metagenomics using pan-metagenomic graphs.bioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. TheeLife · 2025
    Article
  8. Article
  9. Article
  10. Global genomic epidemiology ofMicrobial genomics · 2024
    Article
  11. Article
  12. A gentle introduction to pangenomics.Briefings in bioinformatics · 2024
    Review
  13. Article
  14. Article
  15. ODGI: understanding pangenome graphs.Bioinformatics (Oxford, England) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nicholas NollKavli Institute for Theoretical Physics, University of California, Santa Barbara, CA, USA.
Marco MolariSwiss Institute of Bioinformatics, Basel, Switzerland.
Liam P ShawDepartment of Biology, University of Oxford, Oxford, UK.
Richard A NeherSwiss Institute of Bioinformatics, Basel, Switzerland.

Funding

Wellcome TrustWellcome Trust 220422/Z/20/Z
6 · The paper itself

Abstract

The genomic diversity of microbes is commonly parameterized as SNPs relative to a reference genome of a well-characterized, but arbitrary, isolate. However, any reference genome contains only a fraction of the microbial

Indexed as

Genome, BacterialGenomicsgraphsmicrobial diversitypangenome

Identifiers

PMID37278719
PMCPMC10327495

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.