Evidence map›Paper›PMID 37278516›Full record

ArticleeLife2023

Model discovery to link neural activity to behavioral tasks.

Jamie D Costabile, Kaarthik A Balakrishnan, Sina Schwinn, Martin Haesemeyer

Abstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. PGE2 modulation of stimulus valence directs zebrafish behavioral fever.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Cerebellar Purkinje Cells Control Posture in Larval Zebrafish (bioRxiv : the preprint server for biology · 2024
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jamie D Costabile *Department of Neuroscience, The Ohio State University College of Medicine, Columbus, United States.
Kaarthik A Balakrishnan *Department of Neuroscience, The Ohio State University College of Medicine, Columbus, United States.
Sina SchwinnDepartment of Neuroscience, The Ohio State University College of Medicine, Columbus, United States.
Martin HaesemeyerDepartment of Neuroscience, The Ohio State University College of Medicine, Columbus, United States.ORCID 0000-0003-2704-3601

Funding

Principles of Sensorimotor Processing in Zebrafish ThermosensationR01NS123887 · NINDS · OHIO STATE UNIVERSITY · PI HAESEMEYER, MARTIN · 2021 to 2025
$1.9M
NIH HHS 5R01NS123887-02NINDS NIH HHS R01 NS123887
6 · The paper itself

Abstract

Brains are not engineered solutions to a well-defined problem but arose through selective pressure acting on random variation. It is therefore unclear how well a model chosen by an experimenter can relate neural activity to experimental conditions. Here, we developed 'model identification of neural encoding (MINE).' MINE is an accessible framework using convolutional neural networks (CNNs) to discover and characterize a model that relates aspects of tasks to neural activity. Although flexible, CNNs are difficult to interpret. We use Taylor decomposition approaches to understand the discovered model and how it maps task features to activity. We apply MINE to a published cortical dataset as well as experiments designed to probe thermoregulatory circuits in zebrafish. Here, MINE allowed us to characterize neurons according to their receptive field and computational complexity, features that anatomically segregate in the brain. We also identified a new class of neurons that integrate thermosensory and behavioral information that eluded us previously when using traditional clustering and regression-based approaches.

Indexed as

Neural Networks, ComputerZebrafishAnimalsBrainNeuronscalcium imagingcomputationcomputational biologymethodmodel-discoverymouseneurosciencesystems biologythermoregulationzebrafish

Identifiers

PMID37278516
PMCPMC10310322

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.