Evidence map›Paper›PMID 37276492›Full record

ArticleJCO precision oncology2023

Mutation Burden Independently Predicts Survival in the Pan-Cancer Atlas.

Jeffrey R Smith, Fritz F Parl, William D Dupont

Abstract read
In one paragraph

Article in JCO precision oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jeffrey R SmithDepartment of Medicine, Vanderbilt University Medical Center, Nashville, TN.ORCID 0000-0001-8424-910X
Fritz F ParlVanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN.ORCID 0000-0001-9244-3447
William D DupontVanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN.ORCID 0000-0002-8166-599X

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
The Genetic Origin of Hereditary Prostate CancerI01CX002155 · VA · VETERANS HEALTH ADMINISTRATION · PI SMITH, JEFFREY R. · 2021 to 2025
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CSRD VA I01 CX002155NCATS NIH HHS UL1 TR000445NCI NIH HHS P30 CA068485
6 · The paper itself

Abstract

purposeLong-standing clinical predictors of cancer survival have included histopathologic type, stage, and grade. We hypothesized that the principal categories of tumor somatic mutations might also portend survival. We investigated this hypothesis using the Pan-Cancer Atlas, encompassing clinical, genomic, and outcome data of 10,652 patients and 32 cancer types.

methodsWe evaluated the prognostic capability of cancer type, stage, grade and the burden of each major mutation category on overall and disease-specific survival. Mutation categories included short substitution and insertion-deletion mutations (SMs), copy number alterations (CNAs), and gene fusions.

resultsSM count and CNA fraction proved to be strong independent predictors of survival (joint

conclusionBurden of somatic mutation is a key index of survival of analogous clinical utility to these traditional factors.

Indexed as

NeoplasmsDNA Copy Number VariationsHumansMutationPrognosis

Identifiers

PMID37276492
PMCPMC10309535

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.