Evidence map›Paper›PMID 37276238›Full record

ArticlePLoS computational biology2023

HAT: Hypergraph analysis toolbox.

Joshua Pickard, Can Chen, Rahmy Salman, Cooper Stansbury, Sion Kim, Amit Surana, Anthony Bloch, Indika Rajapakse

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Structure Guides Function: Beyond Pairwise Neural Interactions.The Journal of comparative neurology · 2026
    Review
  2. Article
  3. A Survey on Hyperlink Prediction.IEEE transactions on neural networks and learning systems · 2024
    Article
  4. Article
  5. KRONECKER PRODUCT OF TENSORS AND HYPERGRAPHS: STRUCTURE AND DYNAMICS.SIAM journal on matrix analysis and applications : a publication of the Society for Industrial and Applied Mathematics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joshua PickardDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-8763-3200
Can ChenChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0003-2310-0074
Rahmy SalmanDepartment of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan, United States of America.
Cooper StansburyDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.
Sion KimDepartment of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, Michigan, United States of America.
Amit SuranaRaytheon Technologies Research Center, East Hartford, Connecticut, United States of America.
Anthony BlochDepartment of Mathematics, University of Michigan, Ann Arbor, Michigan, United States of America.
Indika RajapakseDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-6160-9168

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.

Indexed as

ChromosomesSoftware

Identifiers

PMID37276238
PMCPMC10270569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.