Evidence map›Paper›PMID 37275146›Full record

ArticleFrontiers in microbiology2023

Evaluation and development of deep neural networks for RNA 5-Methyluridine classifications using autoBioSeqpy.

Lezheng Yu, Yonglin Zhang, Li Xue, Fengjuan Liu, Runyu Jing, Jiesi Luo

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lezheng YuSchool of Chemistry and Materials Science, Guizhou Education University, Guiyang, China.
Yonglin ZhangDepartment of Pharmacy, Affiliated Hospital of North Sichuan Medical College, Nanchong, China.
Li XueSchool of Public Health, Southwest Medical University, Luzhou, China.
Fengjuan LiuSchool of Geography and Resources, Guizhou Education University, Guiyang, China.
Runyu JingSchool of Cyber Science and Engineering, Sichuan University, Chengdu, China.
Jiesi LuoBasic Medical College, Southwest Medical University, Luzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Post-transcriptionally RNA modifications, also known as the epitranscriptome, play crucial roles in the regulation of gene expression during development. Recently, deep learning (DL) has been employed for RNA modification site prediction and has shown promising results. However, due to the lack of relevant studies, it is unclear which DL architecture is best suited for some pyrimidine modifications, such as 5-methyluridine (m

Indexed as

autoBioSeqpydeep learningRNA 5-methyluridineSHAPUMAP

Identifiers

PMID37275146
PMCPMC10232852

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.