Evidence map›Paper›PMID 37272861›Full record

ArticleThe CRISPR journal2023

Novel and Engineered Type II CRISPR Systems from Uncultivated Microbes with Broad Genome Editing Capability.

Lisa M Alexander, Daniela S Aliaga Goltsman, Jason Liu, Jyun-Liang Lin, Morayma M Temoche-Diaz, Sarah M Laperriere, Andreas Neerincx, Christien Bednarski, Philipp Knyphausen, Andre Cohnen and 11 more

Abstract read
In one paragraph

Article in The CRISPR journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Lisa M AlexanderMetagenomi, Inc., Discovery, Emeryville, California, USA.ORCID 0000-0003-0152-4554
Daniela S Aliaga GoltsmanMetagenomi, Inc., Discovery, Emeryville, California, USA.
Jason LiuMetagenomi, Inc., Discovery, Emeryville, California, USA.
Jyun-Liang LinMetagenomi, Inc., Discovery, Emeryville, California, USA.
Morayma M Temoche-DiazMetagenomi, Inc., Discovery, Emeryville, California, USA.
Sarah M LaperriereMetagenomi, Inc., Discovery, Emeryville, California, USA.
Andreas NeerincxBayer AG, Research & Development, Pharmaceuticals, Leverkusen, Germany.
Christien BednarskiBayer AG, Research & Development, Pharmaceuticals, Leverkusen, Germany.
Philipp KnyphausenBayer AG, Research & Development, Pharmaceuticals, Leverkusen, Germany.
Andre CohnenBayer AG, Research & Development, Pharmaceuticals, Leverkusen, Germany.
Justine AlbersMetagenomi, Inc., Discovery, Emeryville, California, USA.
Liliana Gonzalez-OsorioMetagenomi, Inc., Discovery, Emeryville, California, USA.
Rodrigo Fregoso OcampoMetagenomi, Inc., Discovery, Emeryville, California, USA.
Jennifer OkiMetagenomi, Inc., Discovery, Emeryville, California, USA.
Audra E DevotoMetagenomi, Inc., Discovery, Emeryville, California, USA.
Cindy J CastelleMetagenomi, Inc., Discovery, Emeryville, California, USA.
Rebecca C LamotheMetagenomi, Inc., Discovery, Emeryville, California, USA.ORCID 0000-0003-4942-5950
Gregory J CostMetagenomi Inc., Pre-clinical, Emeryville, California, USA.
Cristina N ButterfieldMetagenomi, Inc., Discovery, Emeryville, California, USA.
Brian C ThomasMetagenomi, Inc., Discovery, Emeryville, California, USA.
Christopher T BrownMetagenomi, Inc., Discovery, Emeryville, California, USA.ORCID 0000-0002-7758-6447

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIH HHS S10 OD018174
6 · The paper itself

Abstract

Type II Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-Cas9 nucleases have been extensively used in biotechnology and therapeutics. However, many applications are not possible owing to the size, targetability, and potential off-target effects associated with currently known systems. In this study, we identified thousands of CRISPR type II effectors by mining an extensive, genome-resolved metagenomics database encompassing hundreds of thousands of microbial genomes. We developed a high-throughput pipeline that enabled us to predict tracrRNA sequences, to design single guide RNAs, and to demonstrate nuclease activity

Indexed as

CRISPR-Cas SystemsGene EditingAnimalsBiotechnologyCRISPR-Associated Protein 9MammalsRNA, Guide, CRISPR-Cas SystemsCRISPR-Associated Protein 9RNA, Guide, CRISPR-Cas Systems

Identifiers

PMID37272861
PMCPMC10278012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.