Evidence map›Paper›PMID 37272356›Full record

ArticleJournal of cell science2023

Quaking regulates circular RNA production in cardiomyocytes.

Pablo Montañés-Agudo, Ingeborg van der Made, Simona Aufiero, Anke J Tijsen, Yigal M Pinto, Esther E Creemers

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  11. Article
  12. Predicting circRNA-RBP Binding Sites Using a Hybrid Deep Neural Network.Interdisciplinary sciences, computational life sciences · 2024
    Article
  13. Article
  14. Molecular mechanisms of circular RNA translation.Experimental & molecular medicine · 2024
    Review
  15. Circular RNAs Variously Participate in Coronary Atherogenesis.Current issues in molecular biology · 2023
    Review
  16. Circular RNAs: the next level of gene regulation.American journal of translational research · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Pablo Montañés-AgudoDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.ORCID 0000-0002-8873-1937
Ingeborg van der MadeDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.
Simona AufieroDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.ORCID 0000-0003-0782-3985
Anke J TijsenDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.ORCID 0000-0002-8030-8894
Yigal M PintoDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.
Esther E CreemersDepartment of Experimental Cardiology, Amsterdam Cardiovascular Sciences, Amsterdam UMC location University of Amsterdam, 1105AZ, Amsterdam, The Netherlands.ORCID 0000-0002-9001-3854
Amsterdam University Medical Centers · NL

Funding

Netherlands Cardiovascular Research Initiative CVON CVON-ARENA-PRIMENetherlands Research Initiative CVON ARENA-PRIMERembrandt Institute of Cardiovascular ScienceUniversity of Amsterdam
6 · The paper itself

Abstract

Circular RNAs (circRNAs) are a class of non-coding RNA molecules that are gaining increasing attention for their roles in various pathophysiological processes. The RNA-binding protein quaking (QKI) has been identified as a regulator of circRNA formation. In this study, we investigate the role of QKI in the formation of circRNAs in the heart by performing RNA-sequencing on Qki-knockout mice. Loss of QKI resulted in the differential expression of 17% of the circRNAs in adult mouse hearts. Interestingly, the majority of the QKI-regulated circRNAs (58%) were derived from genes undergoing QKI-dependent splicing, indicating a relationship between back-splicing and linear splicing. We compared these QKI-dependent circRNAs with those regulated by RBM20, another cardiac splicing factor essential for circRNA formation. We found that QKI and RBM20 regulate the formation of a distinct, but partially overlapping set of circRNAs in the heart. Strikingly, many shared circRNAs were derived from the Ttn gene, and they were regulated in an opposite manner. Our findings indicate that QKI not only regulates alternative splicing in the heart but also the formation of circRNAs.

Indexed as

Myocytes, CardiacRNA, CircularAlternative SplicingAnimalsMiceMice, KnockoutRNARNA-Binding ProteinsRNA SplicingRBM20 protein, mouseRNARNA-Binding ProteinsRNA, CircularAlternative splicingCardiomyocytescircRNAsQuakingRNA-binding proteins

Identifiers

PMID37272356
PMCPMC10323251
OpenAlexW4379375604

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.