ArticlePlant communications2023
A near-complete genome assembly of the allotetrapolyploid Cenchrus fungigraminus (JUJUNCAO) provides insights into its evolution and C4 photosynthesis.
Article in Plant communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed.
- Leveraging AI and integrated genomic-enviromic prediction for intelligent sugarcane breeding.Plant communications · 2026Review
- The near-complete genome assembly of allotetraploidHorticulture research · 2026Article
- Assembly, annotation, and comparative analysis of the first complete mitochondrial genome ofFrontiers in plant science · 2026Article
- Toward improving multiomic research in understudied cereals.Nature genetics · 2025Review
- Genome-wide identification and stress-responsive expression profiling of the TCP gene family in Cenchrus fungigraminus under drought and cold stress.BMC genomics · 2025Article
- Inoculation of Lactobacillus parafarraginis enhances silage quality, microbial community structure, and metabolic profiles in hybrid Pennisetum.BMC plant biology · 2025Article
- The complete mitochondrial genome ofFrontiers in plant science · 2025Article
- Characterization of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Near complete assembly of Pyricularia penniseti infecting Cenchrus grass identified its eight core chromosomes.Scientific data · 2024Article
- Short-Term Effects ofMicroorganisms · 2024Article
- Review
- Long-Term Benefits ofPlants (Basel, Switzerland) · 2024Article
- Application of Miscanthus substrates in the cultivation of Ganoderma lingzhi.Archives of microbiology · 2023Article
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20 authors.
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Abstract
JUJUNCAO (Cenchrus fungigraminus; 2n = 4x = 28) is a Cenchrus grass with the highest biomass production among cultivated plants, and it can be used for mushroom cultivation, animal feed, and biofuel production. Here, we report a nearly complete genome assembly of JUJUNCAO and reveal that JUJUNCAO is an allopolyploid that originated ∼2.7 million years ago (mya). Its genome consists of two subgenomes, and subgenome A shares high collinear synteny with pearl millet. We also investigated the genome evolution of JUJUNCAO and suggest that the ancestral karyotype of Cenchrus split into the A and B ancestral karyotypes of JUJUNCAO. Comparative transcriptome and DNA methylome analyses revealed functional divergence of homeologous gene pairs between the two subgenomes, which was a further indication of asymmetric DNA methylation. The three types of centromeric repeat in the JUJUNCAO genome (CEN137, CEN148, and CEN156) may have evolved independently within each subgenome, with some introgressions of CEN156 from the B to the A subgenome. We investigated the photosynthetic characteristics of JUJUNCAO, revealing its typical C
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