Evidence map›Paper›PMID 37270747›Full record

ArticleFunctional & integrative genomics2023

Genome-wide identification and expression analysis of terpene synthases in Gossypium species in response to gossypol biosynthesis.

Teame Gereziher Mehari, Hui Fang, Wenxiang Feng, Yuanyuan Zhang, Muhammad Jawad Umer, Jinlei Han, Allah Ditta, Muhammad K R Khan, Fang Liu, Kai Wang and 1 more

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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  8. Impact ofJournal of fungi (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Teame Gereziher Mehari *School of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China.
Hui Fang *School of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China.
Wenxiang Feng *School of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China.
Yuanyuan ZhangState Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China.
Muhammad Jawad UmerState Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China.
Jinlei HanSchool of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China.
Allah DittaPlant Breeding and Genetics Division, Nuclear Institute for Agriculture and Biology, Faisalabad, 38000, Pakistan.
Muhammad K R KhanPlant Breeding and Genetics Division, Nuclear Institute for Agriculture and Biology, Faisalabad, 38000, Pakistan.
Fang LiuState Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China. liufcri@163.com.
Kai WangSchool of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China. kwang5@ntu.edu.cn.
Baohua WangSchool of Life Sciences, Nantong University, Nantong, Jiangsu, 226019, China. bhwang@ntu.edu.cn.
Nantong University · CNCotton Research Institute · CNNuclear Institute for Agriculture and Biology · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cottonseed is an invaluable resource, providing protein, oil, and abundant minerals that significantly contribute to the well-being and nutritional needs of both humans and livestock. However, cottonseed also contains a toxic substance called gossypol, a secondary metabolite in Gossypium species that plays an important role in cotton plant development and self-protection. Herein, genome-wide analysis and characterization of the terpene synthase (TPS) gene family identified 304 TPS genes in Gossypium. Bioinformatics analysis revealed that the gene family was grouped into six subgroups TPS-a, TPS-b, TPS-c, TPS-e, TPS-f, and TPS-g. Whole-genome, segmental, and tandem duplication contributed to the evolution of TPS genes. According to the analysis of selection pressure, it was predicted that TPS genes experience predominantly negative selection, with positive selection occurring subsequently. RT-qPCR analysis in TM-1 and CRI-12 lines revealed GhTPS48 gene as the candidate gene for silencing experiments. To summarize, comprehensive genome-wide studies, RT-qPCR, and gene silencing experiments have collectively demonstrated the involvement of the TPS gene family in the biosynthesis of gossypol in cotton.

Indexed as

Alkyl and Aryl TransferasesGossypolCottonseed OilGene Expression Regulation, PlantGossypiumHumansPhylogenyPlant ProteinsAlkyl and Aryl TransferasesCottonseed OilGossypolPlant Proteinsterpene synthaseGossypiumGossypolRT-qPCRTerpene synthase (TPS)Virus-induced gene silencing (VIGS)

Identifiers

PMID37270747
OpenAlexW4379278540

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.