Evidence map›Paper›PMID 37270540›Full record

ArticleNature communications2023

Development of allosteric and selective CDK2 inhibitors for contraception with negative cooperativity to cyclin binding.

Erik B Faber, Luxin Sun, Jian Tang, Emily Roberts, Sornakala Ganeshkumar, Nan Wang, Damien Rasmussen, Abir Majumdar, Laura E Hirsch, Kristen John and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Fine-Tuning DiffDock-L for Allosteric Kinase Docking.Journal of chemical information and modeling · 2026
    Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Erik B FaberDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0002-0525-3774
Luxin SunDrug Discovery Department, Moffitt Cancer Center, Tampa, FL, USA.ORCID 0000-0001-5260-4664
Jian TangDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.
Emily RobertsDepartment of Molecular and Integrative Physiology, Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center, Kansas City, KS, USA.ORCID 0000-0001-6710-0530
Sornakala GaneshkumarDepartment of Molecular and Integrative Physiology, Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center, Kansas City, KS, USA.ORCID 0000-0001-5840-5818
Nan WangDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0002-7869-3797
Damien RasmussenDepartment of Pharmacology, University of Minnesota Medical School-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0001-6828-8520
Abir MajumdarDepartment of Pharmacology, University of Minnesota Medical School-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0002-3516-5855
Laura E HirschDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0001-9230-8181
Kristen JohnDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.
An YangDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.
Hira KhalidDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0001-8857-9683
Jon E HawkinsonDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0001-5461-7071
Nicholas M LevinsonDepartment of Pharmacology, University of Minnesota Medical School-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0003-4338-8087
Vargheese ChennathukuzhiDepartment of Molecular and Integrative Physiology, Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center, Kansas City, KS, USA.ORCID 0000-0002-4178-146X
Daniel A HarkiDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA.ORCID 0000-0001-5950-931X
Ernst SchönbrunnDrug Discovery Department, Moffitt Cancer Center, Tampa, FL, USA.ORCID 0000-0002-3589-3510
Gunda I GeorgDepartment of Medicinal Chemistry, University of Minnesota College of Pharmacy-Twin Cities, Minneapolis, MN, USA. georg@umn.edu.ORCID 0000-0002-8900-9460

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5M
User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI JANET L. SMITH · 2020 to 2026
$34.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008244 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SHIMIZU, YOJI · 1988 to 2024
$13.6M
Training the Next Generation of Chemical BiologistsT32GM132029 · NIGMS · UNIVERSITY OF MINNESOTA · PI Erin Elizabeth Carlson, William Charles Krause Pomerantz · 2019 to 2026
$2.7M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Decoding the dynamic mechanism of allosteric activation in the cyclin-dependent kinase Cdk2R01GM121515 · NIGMS · UNIVERSITY OF MINNESOTA · PI LEVINSON, NICHOLAS MARK · 2018 to 2022
$1.5M
Allosteric CDK2 inhibitor Discovery and Development for Male ContraceptionR61HD099743 · NICHD · UNIVERSITY OF MINNESOTA · PI CHENNATHUKUZHI, VARGHEESE MANI, GEORG, GUNDA I. · 2019 to 2020
$780k
Cell-cycle regulatory kinases as targets for male contraceptive drug developmentR01HD080431 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI CHENNATHUKUZHI, VARGHEESE MANI · 2017 to 2018
$605k
Development of Allosteric Inhibitors against Cyclin-Dependent Kinase 2 (Cdk2)F30CA232303 · NCI · UNIVERSITY OF MINNESOTA · PI FABER, ERIK · 2019 to 2021
$144k
NCI NIH HHS F30 CA232303NCI NIH HHS P30 CA076292NICHD NIH HHS R01 HD080431NICHD NIH HHS R61 HD099743NIGMS NIH HHS P30 GM138396NIGMS NIH HHS R01 GM121515NIGMS NIH HHS T32 GM008244NIGMS NIH HHS T32 GM132029NIH HHS S10 OD012289
6 · The paper itself

Abstract

Compared to most ATP-site kinase inhibitors, small molecules that target an allosteric pocket have the potential for improved selectivity due to the often observed lower structural similarity at these distal sites. Despite their promise, relatively few examples of structurally confirmed, high-affinity allosteric kinase inhibitors exist. Cyclin-dependent kinase 2 (CDK2) is a target for many therapeutic indications, including non-hormonal contraception. However, an inhibitor against this kinase with exquisite selectivity has not reached the market because of the structural similarity between CDKs. In this paper, we describe the development and mechanism of action of type III inhibitors that bind CDK2 with nanomolar affinity. Notably, these anthranilic acid inhibitors exhibit a strong negative cooperative relationship with cyclin binding, which remains an underexplored mechanism for CDK2 inhibition. Furthermore, the binding profile of these compounds in both biophysical and cellular assays demonstrate the promise of this series for further development into a therapeutic selective for CDK2 over highly similar kinases like CDK1. The potential of these inhibitors as contraceptive agents is seen by incubation with spermatocyte chromosome spreads from mouse testicular explants, where they recapitulate Cdk2

Indexed as

Cyclin-Dependent Kinase 2CyclinsProtein Kinase InhibitorsAnimalsContraceptionMiceStructure-Activity RelationshipCyclin-Dependent Kinase 2CyclinsProtein Kinase Inhibitors

Identifiers

PMID37270540
PMCPMC10239507

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.