Evidence map›Paper›PMID 37269020›Full record

ArticleArthritis research & therapy2023

Utilizing biologic disease-modifying anti-rheumatic treatment sequences to subphenotype rheumatoid arthritis.

Priyam Das, Dana Weisenfeld, Kumar Dahal, Debsurya De, Vivi Feathers, Jonathan S Coblyn, Michael E Weinblatt, Nancy A Shadick, Tianxi Cai, Katherine P Liao

Open access · goldAbstract read
In one paragraph

Article in Arthritis research & therapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Clustering Sequence Data with Mixture Markov Chains with Covariates Using Multiple Simplex Constrained Optimization Routine (MSiCOR).Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Priyam Das *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Dana Weisenfeld *Division of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Kumar DahalDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Debsurya DeIndian Statistical Institute, Kolkata, India.
Vivi FeathersDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Jonathan S CoblynDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Michael E WeinblattDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Nancy A ShadickDivision of Rheumatology, Inflammation, and Immunity, Brigham and Women's Hospital, 60 Fenwood Road, Boston, MA, 02115, USA.
Tianxi Cai *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
Katherine P Liao *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. kliao@bwh.harvard.edu.ORCID 0000-0002-4797-3200
Brigham and Women's Hospital · USHarvard University · USIndian Statistical Institute · IN

Funding

VERITY: Value and Evidence in Rheumatology using bioInformaTics, and advanced analYticsP30AR072577 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Daniel Hal Solomon · 2017 to 2026
$9.8M
Bridging clinical trial and real-world data via machine learning to advance rheumatoid arthritis treatment strategiesR01AR080193 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CAI, TIANXI, LIAO, KATHERINE PHOENIX · 2022 to 2025
$2.7M
Studying exceptional treatment non-responders and genetics to predict treatment response in rheumatoid arthritisR21AR078339 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CAI, TIANXI, LIAO, KATHERINE PHOENIX · 2021 to 2022
$444k
NIAMS NIH HHS P30 AR072577NIAMS NIH HHS R01 AR080193NIAMS NIH HHS R21 AR078339
6 · The paper itself

Abstract

backgroundMany patients with rheumatoid arthritis (RA) require a trial of multiple biologic disease-modifying anti-rheumatic drugs (bDMARDs) to control their disease. With the availability of several bDMARD options, the history of bDMARDs may provide an alternative approach to understanding subphenotypes of RA. The objective of this study was to determine whether there exist distinct clusters of RA patients based on bDMARD prescription history to subphenotype RA.

methodsWe studied patients from a validated electronic health record-based RA cohort with data from January 1, 2008, through July 31, 2019; all subjects prescribed ≥ 1 bDMARD or targeted synthetic (ts) DMARD were included. To determine whether subjects had similar b/tsDMARD sequences, the sequences were considered as a Markov chain over the state-space of 5 classes of b/tsDMARDs. The maximum likelihood estimator (MLE)-based approach was used to estimate the Markov chain parameters to determine the clusters. The EHR data of study subjects were further linked with a registry containing prospectively collected data for RA disease activity, i.e., clinical disease activity index (CDAI). As a proof of concept, we tested whether the clusters derived from b/tsDMARD sequences correlated with clinical measures, specifically differing trajectories of CDAI.

resultsWe studied 2172 RA subjects, mean age 52 years, RA duration 3.4 years, and 62% seropositive. We observed 550 unique b/tsDMARD sequences and identified 4 main clusters: (1) TNFi persisters (65.7%), (2) TNFi and abatacept therapy (8.0%), (3) on rituximab or multiple b/tsDMARDs (12.7%), (4) prescribed multiple therapies with tocilizumab predominant (13.6%). Compared to the other groups, TNFi persisters had the most favorable trajectory of CDAI over time.

conclusionWe observed that RA subjects can be clustered based on the sequence of b/tsDMARD prescriptions over time and that the clusters were correlated with differing trajectories of disease activity over time. This study highlights an alternative approach to consider subphenotyping of patients with RA for studies aimed at understanding treatment response.

Indexed as

Antirheumatic AgentsArthritis, RheumatoidBiological ProductsAbataceptHumansMiddle AgedRituximabAbataceptAntirheumatic AgentsBiological ProductsRituximabBiologic disease-modifying anti-rheumatic drugsElectronic health recordMarkov chainMedication prescriptionsMixture modelRheumatoid arthritis

Identifiers

PMID37269020
PMCPMC10236724
OpenAlexW4379157424

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.