Evidence map›Paper›PMID 37267904›Full record

ArticleMolecular cell2023

Multiple adaptations underly co-option of a CRISPR surveillance complex for RNA-guided DNA transposition.

Jung-Un Park, Michael T Petassi, Shan-Chi Hsieh, Eshan Mehrotra, Gabriel Schuler, Jagat Budhathoki, Vinh H Truong, Summer B Thyme, Ailong Ke, Elizabeth H Kellogg and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
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  4. Article
  5. Article
  6. Article
  7. Article
  8. Unveiling Cas8 dynamics and regulation within a transposon-encoded Cascade-TniQ complex.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jung-Un ParkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Michael T PetassiDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Shan-Chi HsiehDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Eshan MehrotraDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Gabriel SchulerDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Jagat BudhathokiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Vinh H TruongDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Summer B ThymeDepartment of Neurobiology, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Ailong KeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Elizabeth H KelloggDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Electronic address: lizkellogg@gmail.com.
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA. Electronic address: joe.peters@cornell.edu.
Cornell University · USUniversity of Alabama at Birmingham · US

Funding

Mechanistic Investigation of RNA-Mediated Gene Regulation and ImmunityR35GM118174 · NIGMS · YALE UNIVERSITY · PI AILONG KE · 2016 to 2026
$7.9M
Structural Basis of Programmable DNA-Insertion via Cryo-EM Studies of CRISPR-Associated TnsCR01GM144566 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Elizabeth Kellogg · 2022 to 2026
$2.0M
CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
Molecular Basis of Genome Organization and Integrity Using Cryo-EMR00GM124463 · NIGMS · CORNELL UNIVERSITY · PI KELLOGG, ELIZABETH · 2019 to 2021
$747k
Building a Comprehensive Discovery System for Understanding Bacterial Multidrug Resistance and Pathogenesis Using Tn7-like ElementsR21AI148941 · NIAID · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2020 to 2021
$400k
NIAID NIH HHS R21 AI148941NIGMS NIH HHS R00 GM124463NIGMS NIH HHS R01 GM129118NIGMS NIH HHS R01 GM144566NIGMS NIH HHS R35 GM118174
6 · The paper itself

Abstract

CRISPR-associated transposons (CASTs) are natural RNA-directed transposition systems. We demonstrate that transposon protein TniQ plays a central role in promoting R-loop formation by RNA-guided DNA-targeting modules. TniQ residues, proximal to CRISPR RNA (crRNA), are required for recognizing different crRNA categories, revealing an unappreciated role of TniQ to direct transposition into different classes of crRNA targets. To investigate adaptations allowing CAST elements to utilize attachment sites inaccessible to CRISPR-Cas surveillance complexes, we compared and contrasted PAM sequence requirements in both I-F3b CAST and I-F1 CRISPR-Cas systems. We identify specific amino acids that enable a wider range of PAM sequences to be accommodated in I-F3b CAST elements compared with I-F1 CRISPR-Cas, enabling CAST elements to access attachment sites as sequences drift and evade host surveillance. Together, this evidence points to the central role of TniQ in facilitating the acquisition of CRISPR effector complexes for RNA-guided DNA transposition.

Indexed as

CRISPR-Associated ProteinsRNACRISPR-Cas SystemsDNACRISPR-Associated ProteinsDNARNACascade-TniQCASTCRISPR-associated transposonCRISPR-Cascryo-EMguide RNA-directedI-F3 CASTPAM recognitionR-loopRNA-guided integrationTn7transposition

Identifiers

PMID37267904
PMCPMC10693918
OpenAlexW4378980823

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.