Evidence map›Paper›PMID 37266877›Full record

ArticleBiotechnology letters2023

Effects of the deletion and substitution of thioesterase on bacillomycin D synthesis.

Ping Zhang, Ziyan Lv, Zhaoxin Lu, Wenjie Ma, Xiaomei Bie

Abstract read
PubMed Publisher
In one paragraph

Article in Biotechnology letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ping Zhang *College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Ziyan Lv *College of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Zhaoxin LuCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Wenjie MaCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
Xiaomei BieCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China. bxm43@njau.edu.cn.ORCID http://orcid.org/0000-0002-2175-0164
Nanjing Agricultural University · CN

Funding

National Natural Science Foundation of China 31972174
6 · The paper itself

Abstract

objectivesThe importance of thioesterase domains on bacillomycin D synthesis and the ability of different thioesterase domains to selectively recognize and catalyze peptide chain hydrolysis and cyclization were studied by deleting and substituting thioesterase domains.

resultsNo bacillomycin D analogs were found in the thioesterase-deleted strain fmbJ-ΔTE, indicating that the TE domain was essential for bacillomycin D synthesis. Then the thioesterase in bacillomycin D synthetases was replaced by the thioesterase in bacillomycin F, iturin A, mycosubtilin, plipastatin and surfactin synthetases. Except for fmbJ-S-TE, all others were able to synthesize bacillomycin D homologs because a suitable recombination site was selected, which maintained the integrity of NRPSs. In particular, the yield of bacillomycin D in fmbJ-IA-TE, fmbJ-M-TE and fmbJ-P-TE was significantly increased.

conclusionThis study expands our understanding of the TE domain in bacillomycin D synthetases and shows that thioesterase has excellent potential in the chemical-enzymatic synthesis of natural products or their analogs.

Indexed as

Bacillomycin DHomologous recombinationProtein structureThioesterase

Identifiers

PMID37266877
OpenAlexW4379093582

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.