Evidence map›Paper›PMID 37266577›Full record

ArticleeLife2023

Decapping factor Dcp2 controls mRNA abundance and translation to adjust metabolism and filamentation to nutrient availability.

Anil Kumar Vijjamarri, Xiao Niu, Matthew D Vandermeulen, Chisom Onu, Fan Zhang, Hongfang Qiu, Neha Gupta, Swati Gaikwad, Miriam L Greenberg, Paul J Cullen and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Genome-wide mapping of DCP2-dependent 5' cap footprints inNAR genomics and bioinformatics · 2026
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  2. Article
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  4. Mot1 regulation of promoter binding by TBP varies with stress and gene expression levels independently of coactivator dependence.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. PLAA/UFD-3 regulates P-bodies through its intrinsic disordered domain.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Roles of P-body factors inbioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Anil Kumar VijjamarriDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.ORCID 0009-0006-6721-3109
Xiao NiuDepartment of Biology, Saint Louis University, St. Louis, United States.
Matthew D VandermeulenDepartment of Biological Sciences, State University of New York, Buffalo, United States.
Chisom OnuDepartment of Biological Sciences, Wayne State University, Detroit, United States.ORCID 0000-0002-3338-5141
Fan ZhangDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.
Hongfang QiuDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.
Neha GuptaDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.
Swati GaikwadDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.ORCID 0000-0002-1438-9497
Miriam L GreenbergDepartment of Biological Sciences, Wayne State University, Detroit, United States.
Paul J CullenDepartment of Biological Sciences, State University of New York, Buffalo, United States.
Zhenguo LinDepartment of Biology, Saint Louis University, St. Louis, United States.
Alan G HinnebuschDivision of Molecular and Cellular Biology, <italic>Eunice Kennedy Shriver National Institute of Child Health and Human Development</italic>, Bethesda, United States.ORCID 0000-0002-1627-8395
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USSaint Louis University · ESState University of New York · USWayne State University · US

Funding

Translational & Transcriptional Control Of Gene Expression By Nutrients In YeastZIAHD001004 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HINNEBUSCH, ALAN G · 2009 to 2025
$34.4M
Control of MAPK Signaling by Cell Polarity ProteinsR01GM098629 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES · 2011 to 2024
$4.4M
THE ROLE OF CARDIOLIPIN IN THE TCA CYCLE: IMPLICATIONS FOR BARTH SYNDROMER01HL117880 · NHLBI · WAYNE STATE UNIVERSITY · PI GREENBERG, MIRIAM L · 2014 to 2023
$3.0M
Regulation of Inositol Biosynthesis and Consequences of Inositol DepletionR35GM149271 · NIGMS · WAYNE STATE UNIVERSITY · PI Miriam L Greenberg · 2023 to 2026
$1.6M
NHLBI NIH HHS HL117880NHLBI NIH HHS R01 HL117880NIGMS NIH HHS GM098629NIGMS NIH HHS R01 GM098629NIGMS NIH HHS R35 GM149271
6 · The paper itself

Abstract

Degradation of most yeast mRNAs involves decapping by Dcp1/Dcp2. DEAD-box protein Dhh1 has been implicated as an activator of decapping, in coupling codon non-optimality to enhanced degradation, and as a translational repressor, but its functions in cells are incompletely understood. RNA-Seq analyses coupled with CAGE sequencing of all capped mRNAs revealed increased abundance of hundreds of mRNAs in

Indexed as

Saccharomyces cerevisiae ProteinsEndoribonucleasesNonsense Mediated mRNA DecayNutrientsRibonucleoproteinsRNA, MessengerRNA StabilitySaccharomyces cerevisiaeEndoribonucleasesNutrientsRibonucleoproteinsRNA, MessengerSaccharomyces cerevisiae ProteinsScd6 protein, S cerevisiaechromosomesDcp2decappingdegradationDhh1gene expressiongeneticsgenomicsNMDS. cerevisiaetranslation

Identifiers

PMID37266577
PMCPMC10287164
OpenAlexW4379094552

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.