Evidence map›Paper›PMID 37265123›Full record

ArticlePlant physiology2023

Genome-wide association study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation.

Fayezeh Aarabi, Andrea Ghigi, Micha Wijesingha Ahchige, Mustafa Bulut, Peter Geigenberger, H Ekkehard Neuhaus, Arun Sampathkumar, Saleh Alseekh, Alisdair R Fernie

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
9.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
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  10. Ascorbic acid metabolism and functions.Journal of experimental botany · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Fayezeh AarabiCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0002-5099-5400
Andrea GhigiCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0001-9876-5869
Micha Wijesingha AhchigeCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0003-3393-4224
Mustafa BulutCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0002-6038-518X
Peter GeigenbergerDepartment Biology I, Ludwig-Maximilians-University Munich, Planegg-Martinsried 82152, Germany.ORCID 0000-0001-9512-349X
H Ekkehard NeuhausPlant Physiology, University of Kaiserslautern, Kaiserslautern D-67653, Germany.ORCID 0000-0002-5443-7123
Arun SampathkumarCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0003-1703-0137
Saleh AlseekhCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0003-2067-5235
Alisdair R FernieCentral Metabolism, Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany.ORCID 0000-0001-9000-335X
Max Planck Institute of Molecular Plant Physiology · DECenter of Plant Systems Biology and Biotechnology · BGLudwig-Maximilians-Universität München · DEUniversity of Kaiserslautern · DE

Funding

Max Planck SocietySonderforschungsbereich
6 · The paper itself

Abstract

Varying light conditions elicit metabolic responses as part of acclimation with changes in ascorbate levels being an important component. Here, we adopted a genome-wide association-based approach to characterize the response in ascorbate levels on high light (HL) acclimation in a panel of 315 Arabidopsis (Arabidopsis thaliana) accessions. These studies revealed statistically significant SNPs for total and reduced ascorbate under HL conditions at a locus in chromosome 2. Ascorbate levels under HL and the region upstream and within PAS/LOV PROTEIN (PLP) were strongly associated. Intriguingly, subcellular localization analyses revealed that the PLPA and PLPB splice variants co-localized with VITAMIN C DEFECTIVE2 (VTC2) and VTC5 in both the cytosol and nucleus. Yeast 2-hybrid and bimolecular fluorescence complementation analyses revealed that PLPA and PLPB interact with VTC2 and that blue light diminishes this interaction. Furthermore, PLPB knockout mutants were characterized by 1.5- to 1.7-fold elevations in their ascorbate levels, whereas knockout mutants of the cry2 cryptochromes displayed 1.2- to 1.3-fold elevations compared to WT. Our results collectively indicate that PLP plays a critical role in the elevation of ascorbate levels, which is a signature response of HL acclimation. The results strongly suggest that this is achieved via the release of the inhibitory effect of PLP on VTC2 upon blue light illumination, as the VTC2-PLPB interaction is stronger under darkness. The conditional importance of the cryptochrome receptors under different environmental conditions suggests a complex hierarchy underpinning the environmental control of ascorbate levels. However, the data we present here clearly demonstrate that PLP dominates during HL acclimation.

Indexed as

ArabidopsisArabidopsis ProteinsAcclimatizationAscorbic AcidGenome-Wide Association StudyLightArabidopsis ProteinsAscorbic Acid

Identifiers

PMID37265123
PMCPMC10602610
OpenAlexW4379094435

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.