Evidence map›Paper›PMID 37264902›Full record

ArticleNucleic acids research2023

Cas1-Cas2 physically and functionally interacts with DnaK to modulate CRISPR Adaptation.

Tom Killelea, Juachi U Dimude, Liu He, Alison L Stewart, Fiona E Kemm, Marin Radovčić, Ivana Ivančić-Baće, Christian J Rudolph, Edward L Bolt

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Tom KilleleaSchool of Life Sciences, University of Nottingham, UK.
Juachi U DimudeDivision of Biosciences, College of Health, Medicine and Life Sciences, Brunel University London, Uxbridge, UK.ORCID 0000-0002-4418-6295
Liu HeSchool of Life Sciences, University of Nottingham, UK.
Alison L StewartSchool of Life Sciences, University of Nottingham, UK.
Fiona E KemmSchool of Life Sciences, University of Nottingham, UK.
Marin RadovčićDepartment of Biology, Faculty of Science, University of Zagreb, Croatia.
Ivana Ivančić-BaćeDepartment of Biology, Faculty of Science, University of Zagreb, Croatia.
Christian J RudolphDivision of Biosciences, College of Health, Medicine and Life Sciences, Brunel University London, Uxbridge, UK.ORCID 0000-0003-2493-3748
Edward L BoltSchool of Life Sciences, University of Nottingham, UK.ORCID 0000-0002-5656-7706
University of Nottingham · GBBrunel University of London · GBUniversity of Zagreb · HR

Funding

Biotechnology and Biological Sciences Research Council BB/T006625-1Biotechnology and Biological Sciences Research Council BB/T007168/1
6 · The paper itself

Abstract

Prokaryotic Cas1-Cas2 protein complexes generate adaptive immunity to mobile genetic elements (MGEs), by capture and integration of MGE DNA in to CRISPR sites. De novo immunity relies on naive adaptation-Cas1-Cas2 targeting of MGE DNA without the aid of pre-existing immunity 'interference' complexes-by mechanisms that are not clear. Using E. coli we show that the chaperone DnaK inhibits DNA binding and integration by Cas1-Cas2, and inhibits naive adaptation in cells that results from chromosomal self-targeting. Inhibition of naive adaptation was reversed by deleting DnaK from cells, by mutation of the DnaK substrate binding domain, and by expression of an MGE (phage λ) protein. We also imaged fluorescently labelled Cas1 in living cells, observing that Cas1 foci depend on active DNA replication, and are much increased in frequency in cells lacking DnaK. We discuss a model in which DnaK provides a mechanism for restraining naive adaptation from DNA self-targeting, until DnaK is triggered to release Cas1-Cas2 to target MGE DNA.

Indexed as

CRISPR-Associated ProteinsEscherichia coli ProteinsHSP70 Heat-Shock ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsDNAEscherichia coliCRISPR-Associated ProteinsDNAdnaK protein, E coliEscherichia coli ProteinsHSP70 Heat-Shock Proteins

Identifiers

PMID37264902
PMCPMC10359635
OpenAlexW4379094135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.