Evidence map›Paper›PMID 37264229›Full record

ArticleNature immunology2023

HLA class I signal peptide polymorphism determines the level of CD94/NKG2-HLA-E-mediated regulation of effector cell responses.

Zhansong Lin, Arman A Bashirova, Mathias Viard, Lee Garner, Max Quastel, Maya Beiersdorfer, Wojciech K Kasprzak, Marjan Akdag, Yuko Yuki, Pedro Ojeda and 9 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
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  4. HLA-E-Directed Accumulation of KIRInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 4 countries.

Zhansong Lin *Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-9714-442X
Arman A Bashirova *Basic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Mathias ViardBasic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Lee GarnerCentre for Immuno-Oncology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3799-0266
Max QuastelCentre for Immuno-Oncology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-6551-4713
Maya BeiersdorferLeibniz Institute of Virology, Hamburg, Germany.
Wojciech K KasprzakBasic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Marjan AkdagBasic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Yuko YukiBasic Science Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Pedro OjedaRagon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
Sudipto DasCancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Thorkell AndressonCancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
Vivek NaranbhaiMassachusetts General Hospital Cancer Center, Division of Hematology/Oncology, Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.
Amir HorowitzDepartment of Oncological Sciences, Precision Immunology Institute, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Andrew J McMichaelCentre for Immuno-Oncology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-9101-7478
Angelique HoelzemerLeibniz Institute of Virology, Hamburg, Germany.
Geraldine M GillespieCentre for Immuno-Oncology, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-1075-870X
Wilfredo F Garcia-BeltranRagon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
Mary CarringtonRagon Institute of MGH, MIT and Harvard, Cambridge, MA, USA. carringm@mail.nih.gov.ORCID http://orcid.org/0000-0002-2692-2180
Frederick National Laboratory for Cancer Research · USRagon Institute of MGH, MIT and Harvard · USUniversity of Oxford · GBLeibniz Institute of Virology (LIV) · DECentre for the AIDS Programme of Research in South Africa · ZATisch Hospital · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Molecular genetics and population studies of the KIR and HLA gene complexesZIABC010792 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$7.8M
Intramural NIH HHS ZIA BC010792Medical Research Council MR/M019837/1NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

Human leukocyte antigen (HLA)-E binds epitopes derived from HLA-A, HLA-B, HLA-C and HLA-G signal peptides (SPs) and serves as a ligand for CD94/NKG2A and CD94/NKG2C receptors expressed on natural killer and T cell subsets. We show that among 16 common classical HLA class I SP variants, only 6 can be efficiently processed to generate epitopes that enable CD94/NKG2 engagement, which we term 'functional SPs'. The single functional HLA-B SP, known as HLA-B/-21M, induced high HLA-E expression, but conferred the lowest receptor recognition. Consequently, HLA-B/-21M SP competes with other SPs for providing epitope to HLA-E and reduces overall recognition of target cells by CD94/NKG2A, calling for reassessment of previous disease models involving HLA-B/-21M. Genetic population data indicate a positive correlation between frequencies of functional SPs in humans and corresponding cytomegalovirus mimics, suggesting a means for viral escape from host responses. The systematic, quantitative approach described herein will facilitate development of prediction algorithms for accurately measuring the impact of CD94/NKG2-HLA-E interactions in disease resistance/susceptibility.

Indexed as

Killer Cells, NaturalProtein Sorting SignalsHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHLA-E AntigensHumansLectins, C-TypeNK Cell Lectin-Like Receptor Subfamily DReceptors, Natural Killer CellHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHLA-E AntigensLectins, C-TypeNK Cell Lectin-Like Receptor Subfamily DProtein Sorting SignalsReceptors, Natural Killer Cell

Identifiers

PMID37264229
PMCPMC10690437
OpenAlexW4379016600

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.