ArticleCommunications biology2023
Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales.
Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 10 citations in OpenAlex.
- The genome of Thesium ramosoides (Santalales) reveals evolutionary dynamics associated with parasitism and alpine adaptation.Plant communications · 2026Article
- Chromosome-level genome assembly of the hemiparasitic Taxillus sutchuenensis (Loranthaceae).Scientific data · 2026Article
- Genetic and genomic resources of Santalum album: past achievements and future prospects.Genetica · 2025Review
- Chromosome-level genome assembly of a hemiparasitic plant, Scurrula parasitica (Loranthaceae).Scientific data · 2025Article
- Article
- Microsatellite marker-based analysis of the genetic diversity and population structure of three Arnebiae Radix in western China.Journal, genetic engineering & biotechnology · 2024Article
- Exploring Information Exchange betweenPlants (Basel, Switzerland) · 2024Article
- The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood.GigaScience · 2024Article
- Improved chromosome-level genome assembly of Indian sandalwood (Santalum album).Scientific data · 2023Article
- Integrated mRNA and small RNA sequencing reveals post-transcriptional regulation of the sesquiterpene pathway in3 Biotech · 2023Article
Corrections and comments
- Erratum issued
Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sandalwood is one of the most expensive woods in the world and is well known for its long-lasting and distinctive aroma. In our study, chromosome-level genome assemblies for two sandalwood species (Santalum album and Santalum yasi) were constructed by integrating NGS short reads, RNA-seq, and Hi-C libraries with PacBio HiFi long reads. The S. album and S. yasi genomes were both assembled into 10 pseudochromosomes with a length of 229.59 Mb and 232.64 Mb, containing 21,673 and 22,816 predicted genes and a repeat content of 28.93% and 29.54% of the total genomes, respectively. Further analyses resolved a Santalum-specific whole-genome triplication event after divergence from ancestors of the Santalales lineage Malania, yet due to dramatic differences in transposon content, the Santalum genomes were only one-sixth the size of the Malania oleifera genome. Examination of RNA-seq data revealed a suite of genes that are differentially expressed in haustoria and might be involved in host hemiparasite interactions. The two genomes presented here not only provide an important comparative dataset for studying genome evolution in early diverging eudicots and hemiparasitic plants but will also hasten the application of conservation genomics for a lineage of trees recovering from decades of overexploitation.
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