ArticleScientific data2023
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition.
Article in Scientific data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Dominance modifiers at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical pathways.PLoS genetics · 2026Article
- Article
- High diversity of crustose coralline algae microbiomes across species and islands, and implications for coral recruits.Environmental microbiome · 2024Article
- The NEREA Augmented Observatory: an integrative approach to marine coastal ecology.Scientific data · 2024Article
- The road forward to incorporate seawater microbes in predictive reef monitoring.Environmental microbiome · 2024Review
- A targeted approach to enrich host-associated bacteria for metagenomic sequencing.FEMS microbes · 2024Article
- Microorganisms, climate change, and the Sustainable Development Goals: progress and challenges.Nature reviews. Microbiology · 2023Article
- Peeling back the layers of coral holobiont multi-omics data.iScience · 2023Article
- Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation.npj biodiversity · 2023Article
- Insights and achievements from the Tara Pacific expedition.Nature communications · 2023Article
- Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.Nature communications · 2023Article
- Diversity of the Pacific Ocean coral reef microbiome.Nature communications · 2023Article
- Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.Nature communications · 2023Article
- Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.Nature communications · 2023Article
- Pervasive tandem duplications and convergent evolution shape coral genomes.Genome biology · 2023Article
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Authors and funding
52 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.
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