Evidence map›Paper›PMID 37264015›Full record

ArticleNature communications2023

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean.

Corentin Hochart, Lucas Paoli, Hans-Joachim Ruscheweyh, Guillem Salazar, Emilie Boissin, Sarah Romac, Julie Poulain, Guillaume Bourdin, Guillaume Iwankow, Clémentine Moulin and 31 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

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  20. Genomic insights into hostMicrobial genomics · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors.

Corentin HochartSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650, Banyuls sur Mer, France.ORCID 0000-0002-8508-7912
Lucas PaoliDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8093, Zürich, Switzerland.ORCID 0000-0003-0771-8309
Hans-Joachim RuscheweyhDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8093, Zürich, Switzerland.ORCID 0000-0001-7473-6086
Guillem SalazarDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8093, Zürich, Switzerland.ORCID 0000-0002-9786-1493
Emilie BoissinPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.ORCID 0000-0002-4110-790X
Sarah RomacSorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France.
Julie PoulainGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.
Guillaume BourdinSchool of Marine Sciences, University of Maine, Orono, ME, USA.ORCID 0000-0001-7608-5256
Guillaume IwankowPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.
Clémentine MoulinFondation Tara Océan, 8 rue de Prague, 75012, Paris, France.
Maren ZieglerDepartment of Animal Ecology & Systematics, Justus Liebig University Giessen, Heinrich-Buff-Ring 26-32 (IFZ), 35392, Giessen, Germany.
Barbara PorroCNRS, INSERM, Institute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, Nice, France.
Eric J ArmstrongPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.ORCID 0000-0003-1223-4907
Benjamin C C HumeDepartment of Biology, University of Konstanz, 78457, Konstanz, Germany.
Jean-Marc AuryGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.ORCID 0000-0003-1718-3010
Claudia PogoreutzPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.ORCID 0000-0002-2853-7673
David A Paz-GarcíaCentro de Investigaciones Biológicas del Noroeste (CIBNOR), La Paz, Baja California Sur, 23096, México.
Maggy M NuguesPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.ORCID 0000-0002-1399-9787
Sylvain AgostiniShimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka, Japan.ORCID 0000-0001-9040-9296
Bernard BanaigsPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.
Emmanuel BossSchool of Marine Sciences, University of Maine, Orono, ME, 04469, USA.ORCID 0000-0002-8334-9595
Chris BowlerResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 75000, Paris, France.ORCID 0000-0003-3835-6187
Colomban de VargasSorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144, ECOMAP, Roscoff, France.
Eric DouvilleLaboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA-CNRS-UVSQ, Université Paris-Saclay, 91191, Gif-sur-Yvette, France.ORCID 0000-0002-6673-1768
Michel FloresWeizmann Institute of Science, Department of Earth and Planetary Sciences, 76100, Rehovot, Israel.ORCID 0000-0003-3609-286X
Didier ForcioliCNRS, INSERM, Institute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, Nice, France.ORCID 0000-0002-5505-0932
Paola FurlaCNRS, INSERM, Institute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, Nice, France.ORCID 0000-0001-9899-942X
Eric GilsonCNRS, INSERM, Institute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, Nice, France.ORCID 0000-0001-5738-6723
Fabien LombardResearch Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara GOSEE, 75000, Paris, France.ORCID 0000-0002-8626-8782
Stéphane PesantEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Stéphanie ReynaudLaboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco (LIA ROPSE), Monaco, Principality of Monaco.ORCID 0000-0001-9975-6075
Olivier P ThomasSchool of Biological and Chemical Sciences, Ryan Institute, University of Galway, Galway, Ireland.
Romain TroubléFondation Tara Océan, 8 rue de Prague, 75012, Paris, France.ORCID 0000-0002-8304-808X
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, Evry, France.ORCID 0000-0001-7562-3454
Didier ZoccolaLaboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco (LIA ROPSE), Monaco, Principality of Monaco.ORCID 0000-0002-1524-8098
Denis AllemandLaboratoire International Associé Université Côte d'Azur-Centre Scientifique de Monaco (LIA ROPSE), Monaco, Principality of Monaco.ORCID 0000-0002-3089-4290
Serge PlanesPSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence CORAIL, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France.
Rebecca Vega ThurberMicrobiology Department, Oregon State University, Corvallis, OR, USA.ORCID 0000-0003-3516-2061
Christian R VoolstraDepartment of Biology, University of Konstanz, 78457, Konstanz, Germany.ORCID 0000-0003-4555-3795
Shinichi SunagawaDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich, 8093, Zürich, Switzerland.ORCID 0000-0003-3065-0314
Pierre E GalandSorbonne Université, CNRS, Laboratoire d'Ecogéochimie des Environnements Benthiques (LECOB), Observatoire Océanologique de Banyuls, 66650, Banyuls sur Mer, France. pierre.galand@obs-banyuls.fr.ORCID 0000-0002-2238-3247

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Health and resilience of the coral holobiont depend on diverse bacterial communities often dominated by key marine symbionts of the Endozoicomonadaceae family. The factors controlling their distribution and their functional diversity remain, however, poorly known. Here, we study the ecology of Endozoicomonadaceae at an ocean basin-scale by sampling specimens from three coral genera (Pocillopora, Porites, Millepora) on 99 reefs from 32 islands across the Pacific Ocean. The analysis of 2447 metabarcoding and 270 metagenomic samples reveals that each coral genus harbored a distinct new species of Endozoicomonadaceae. These species are composed of nine lineages that have distinct biogeographic patterns. The most common one, found in Pocillopora, appears to be a globally distributed symbiont with distinct metabolic capabilities, including the synthesis of amino acids and vitamins not produced by the host. The other lineages are structured partly by the host genetic lineage in Pocillopora and mainly by the geographic location in Porites. Millepora is more rarely associated to Endozoicomonadaceae. Our results show that different coral genera exhibit distinct strategies of host-Endozoicomonadaceae associations that are defined at the bacteria lineage level.

Indexed as

AnthozoaGammaproteobacteriaAnimalsBacteriaCoral ReefsEcologyPacific Ocean

Identifiers

PMID37264015
PMCPMC10235432

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.