Evidence map›Paper›PMID 37262429›Full record

ArticleThe Journal of heredity2023

Chromosome-level reference genome of stinkwort, Dittrichia graveolens (L.) Greuter: A resource for studies on invasion, range expansion, and evolutionary adaptation under global change.

Susan L McEvoy, Nicky Lustenhouwer, Miranda K Melen, Oanh Nguyen, Mohan P A Marimuthu, Noravit Chumchim, Eric Beraut, Ingrid M Parker, Rachel S Meyer

Abstract read
In one paragraph

Article in The Journal of heredity, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Susan L McEvoyDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-0028-4299
Nicky LustenhouwerDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-5157-857X
Miranda K MelenDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-1053-2532
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.ORCID 0000-0003-1492-2084
Mohan P A MarimuthuDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.
Noravit ChumchimDNA Technologies and Expression Analysis Core Laboratory, Genome Center, University of California, Davis, CA, United States.
Eric BerautDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-4443-6282
Ingrid M ParkerDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-4847-1827
Rachel S MeyerDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, United States.ORCID 0000-0002-4907-5797

Funding

Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS S10 OD010786
6 · The paper itself

Abstract

Dittrichia graveolens (L.) Greuter, or stinkwort, is a weedy annual plant within the family Asteraceae. The species is recognized for the rapid expansion of both its native and introduced ranges: in Europe, it has expanded its native distribution northward from the Mediterranean basin by nearly 7 °C latitude since the mid-20th century, while in California and Australia the plant is an invasive weed of concern. Here, we present the first de novo D. graveolens genome assembly (1N = 9 chromosomes), including complete chloroplast (151,013 bp) and partial mitochondrial genomes (22,084 bp), created using Pacific Biosciences HiFi reads and Dovetail Omni-C data. The final primary assembly is 835 Mbp in length, of which 98.1% are represented by 9 scaffolds ranging from 66 to 119 Mbp. The contig N50 is 74.9 Mbp and the scaffold N50 is 96.9 Mbp, which, together with a 98.8% completeness based on the BUSCO embryophyta10 database containing 1,614 orthologs, underscores the high quality of this assembly. This pseudo-molecule-scale genome assembly is a valuable resource for our fundamental understanding of the genomic consequences of range expansion under global change, as well as comparative genomic studies in the Asteraceae.

Indexed as

GenomeGenomicsBiological EvolutionChromosomesPhylogenyAsteraceaeCaliforniaDovetail Omni-Corganelle genomesPacific Biosciences HiFirange shift

Identifiers

PMID37262429
PMCPMC10445520

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.