Evidence map›Paper›PMID 37262137›Full record

ArticleScience (New York, N.Y.)2023

A functional group-guided approach to aptamers for small molecules.

Kyungae Yang, Noelle M Mitchell, Saswata Banerjee, Zhenzhuang Cheng, Steven Taylor, Aleksandra M Kostic, Isabel Wong, Sairaj Sajjath, Yameng Zhang, Jacob Stevens and 5 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Aptamer-based DNA nanoswitches for multiplexed protein detection.Chemical communications (Cambridge, England) · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Capture-SELEX of DNA Aptamers for Highly Selective Binding of Folate.Chembiochem : a European journal of chemical biology · 2026
    Article
  12. Aptamer-based DNA nanoswitches for multiplexed protein detection.bioRxiv : the preprint server for biology · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Kyungae YangDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-5575-4107
Noelle M MitchellDepartment of Chemistry and Biochemistry and California Nanosystems Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.ORCID 0009-0002-0263-240X
Saswata BanerjeeDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0009-0000-5686-5087
Zhenzhuang ChengDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.
Steven TaylorDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.
Aleksandra M KosticDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-4525-2773
Isabel WongDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0009-0007-8783-3054
Sairaj SajjathDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-7156-3279
Yameng ZhangDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0009-0005-7038-7049
Jacob StevensDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-9614-1673
Sumit MohanDepartment of Epidemiology, Mailman School of Public Health, New York, NY 10032, USA.ORCID 0000-0002-5305-9685
Donald W LandryDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-4046-5665
Tilla S WorgallDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-0587-5223
Anne M AndrewsDepartment of Chemistry and Biochemistry and California Nanosystems Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA.ORCID 0000-0002-1961-4833
Milan N StojanovicDepartment of Medicine, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-6340-0982

Funding

Micro- to Nanoscale Neurochemical SensorsR01DA045550 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ANDREWS, ANNE MILASINCIC · 2017 to 2021
$5.8M
Bio-electrochemical detectors for in vivo continuous monitoringR01EB022015 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI KIPPIN, TOD EDWARD, PLAXCO, KEVIN W · 2017 to 2025
$4.6M
Continuous Therapeutic Drug Monitoring of Antibiotics in CRRTR01DK126739 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MOHAN, SUMIT · 2021 to 2024
$2.8M
Analog-based Approaches to Isolation of Aptamers for Challenging TargetsR01GM138843 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI STOJANOVIC, MILAN N · 2020 to 2023
$2.3M
NIBIB NIH HHS R01 EB022015NIDA NIH HHS R01 DA045550NIDDK NIH HHS R01 DK126739NIGMS NIH HHS R01 GM138843
6 · The paper itself

Abstract

Aptameric receptors are important biosensor components, yet our ability to identify them depends on the target structures. We analyzed the contributions of individual functional groups on small molecules to binding within 27 target-aptamer pairs, identifying potential hindrances to receptor isolation-for example, negative cooperativity between sterically hindered functional groups. To increase the probability of aptamer isolation for important targets, such as leucine and voriconazole, for which multiple previous selection attempts failed, we designed tailored strategies focused on overcoming individual structural barriers to successful selections. This approach enables us to move beyond standardized protocols into functional group-guided searches, relying on sequences common to receptors for targets and their analogs to serve as anchors in regions of vast oligonucleotide spaces wherein useful reagents are likely to be found.

Indexed as

Antifungal AgentsAptamers, NucleotideBiosensing TechniquesLeucineSELEX Aptamer TechniqueVoriconazoleAntifungal AgentsAptamers, NucleotideLeucineVoriconazole

Identifiers

PMID37262137
PMCPMC10686217

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.