Evidence map›Paper›PMID 37261732›Full record

ArticleEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin2023

Emergence, spread and characterisation of the SARS-CoV-2 variant B.1.640 circulating in France, October 2021 to February 2022.

Gwenola Picard, Lucie Fournier, Anna Maisa, Claire Grolhier, Souhaila Chent, Caroline Huchet-Kervalla, Jeanne Sudour, Maël Pretet, Laurence Josset, Sylvie Behillil and 5 more

Open access · diamondAbstract read
In one paragraph

Article in Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Gwenola PicardBretagne Regional Office, Direction des Régions (DiRe), Santé publique France, Rennes, France.
Lucie FournierDirection des Maladies Infectieuses (DMI), Santé publique France, Saint-Maurice, France.
Anna MaisaDirection des Maladies Infectieuses (DMI), Santé publique France, Saint-Maurice, France.
Claire GrolhierDepartment of Virology, INSERM, IRSET UMR-S 1085, Pontchaillou University Hospital, Université de Rennes, Rennes, France.
Souhaila ChentHauts-de-France Regional Office, Direction des Régions (DiRe), Santé publique France, Lille, France.
Caroline Huchet-KervallaPays-de-la-Loire Regional Office, Direction des Régions (DiRe), Santé publique France, Nantes, France.
Jeanne SudourDirection DATA, Santé publique France, Saint-Maurice, France.
Maël PretetDirection DATA, Santé publique France, Saint-Maurice, France.
Laurence JossetCentre National de Référence Virus des Infections Respiratoires (dont la grippe) and Plateforme GENEPII Laboratoire de Virologie des HCL, Hopital de la Croix Rousse, Lyon, France.
Sylvie BehillilUnité de Génétique Moléculaire des Virus à ARN - UMR3569 CNRS, Université de Paris, Paris, France.
Justine SchaefferDirection des Maladies Infectieuses (DMI), Santé publique France, Saint-Maurice, France.
Laboratory groupMembers of the Laboratory group are listed under Collaborators.
COVID-19 Investigation GroupMembers of the COVID-19 Investigation group are listed under Collaborators.
Members of the Laboratory group
Members of the COVID-19 Investigation group
Santé Publique France · FRCentre National de la Recherche Scientifique · FRCollaborative Group (United States) · USInserm · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BackgroundSuccessive epidemic waves of COVID-19 illustrated the potential of SARS-CoV-2 variants to reshape the pandemic. Detecting and characterising emerging variants is essential to evaluate their public health impact and guide implementation of adapted control measures.AimTo describe the detection of emerging variant, B.1.640, in France through genomic surveillance and present investigations performed to inform public health decisions.MethodsIdentification and monitoring of SARS-CoV-2 variant B.1.640 was achieved through the French genomic surveillance system, producing 1,009 sequences. Additional investigation of 272 B.1.640-infected cases was performed between October 2021 and January 2022 using a standardised questionnaire and comparing with Omicron variant-infected cases.ResultsB.1.640 was identified in early October 2021 in a school cluster in Bretagne, later spreading throughout France. B.1.640 was detected at low levels at the end of SARS-CoV-2 Delta variant's dominance and progressively disappeared after the emergence of the Omicron (BA.1) variant. A high proportion of investigated B.1.640 cases were children aged under 14 (14%) and people over 60 (27%) years, because of large clusters in these age groups. B.1.640 cases reported previous SARS-CoV-2 infection (4%), anosmia (32%) and ageusia (34%), consistent with data on pre-Omicron SARS-CoV-2 variants. Eight percent of investigated B.1.640 cases were hospitalised, with an overrepresentation of individuals aged over 60 years and with risk factors.ConclusionEven though B.1.640 did not outcompete the Delta variant, its importation and continuous low-level spread raised concerns regarding its public health impact. The investigations informed public health decisions during the time that B.1.640 was circulating.

Indexed as

COVID-19SARS-CoV-2AgedChildFranceHumansMiddle AgedPandemicsB.1.640COVID-19emerging variantgenomic surveillanceSARS-CoV-2whole genome sequencing

Identifiers

PMID37261732
PMCPMC10236926
OpenAlexW4378953422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.