Evidence map›Paper›PMID 37260386›Full record

ArticleJournal of bacteriology2023

F-Type Pyocins Are Diverse Noncontractile Phage Tail-Like Weapons for Killing

Senjuti Saha, Chidozie D Ojobor, Annie Si Cong Li, Erik Mackinnon, Olesia I North, Joseph Bondy-Denomy, Joseph S Lam, Alexander W Ensminger, Karen L Maxwell, Alan R Davidson

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. The Lord of the Rings: Cysteine bonds crosslink the tail of siphovirus.Protein science : a publication of the Protein Society · 2026
    Article
  3. F-Type Pyocin Versus Phage λ Tail: Conserved Hub, Divergent Fibers.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Article
  5. Balancing of immune activation and suppression during phage infection.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Lipopolysaccharide-targeting treatments for multidrug-resistantExpert opinion on therapeutic targets · 2026
    Review
  9. Article
  10. Review
  11. A dramatic protein fold switch powers a bactericidal nanomachine.bioRxiv : the preprint server for biology · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Directed evolution of bacteriophages: thwarted by prolific prophage.Applied and environmental microbiology · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Senjuti SahaDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Chidozie D OjoborDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Annie Si Cong LiDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Erik MackinnonDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Olesia I NorthDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-9634-6377
Joseph Bondy-DenomyDepartment of Microbiology and Immunology, Quantitative Biosciences Institute, University of California-San Francisco, San Francisco, California, USA.ORCID 0000-0002-4909-9481
Joseph S LamDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.ORCID 0000-0002-1822-1165
Alexander W EnsmingerDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0003-0824-3704
Karen L MaxwellDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-0211-5480
Alan R DavidsonDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0002-0744-9199
University of Toronto · CAUniversity of California, San Francisco · USUniversity of Guelph · CA

Funding

CIHR FDN-15427CIHR MOP-136845CIHR PHT-148819CIHR XNE-86943
6 · The paper itself

Abstract

Most Pseudomonas aeruginosa strains produce bacteriocins derived from contractile or noncontractile phage tails known as R- and F-type pyocins, respectively. These bacteriocins possess strain-specific bactericidal activity against P. aeruginosa and likely increase evolutionary fitness through intraspecies competition. R-type pyocins have been studied extensively and show promise as alternatives to antibiotics. Although they have similar therapeutic potential, experimental studies on F-type pyocins are limited. Here, we provide a bioinformatic and experimental investigation of F-type pyocins. We introduce a systematic naming scheme for genes found in R- and F-type pyocin operons and identify 15 genes invariably found in strains producing F-type pyocins. Five proteins encoded at the 3' end of the F-type pyocin cluster are divergent in sequence and likely determine bactericidal specificity. We use sequence similarities among these proteins to define eleven distinct F-type pyocin groups, five of which had not been previously described. The five genes encoding the variable proteins associate in two modules that have clearly reassorted independently during the evolution of these operons. These proteins are considerably more diverse than the specificity-determining tail fibers of R-type pyocins, suggesting that F-type pyocins may have emerged earlier. Experimental studies on six F-type pyocin groups show that each displays a distinct spectrum of bactericidal activity. This activity is strongly influenced by the lipopolysaccharide O-antigen type, but other factors also play a role. F-type pyocins appear to kill as efficiently as R-type pyocins. These studies set the stage for the development of F-type pyocins as antibacterial therapeutics.

Indexed as

BacteriocinsBacteriophagesAnti-Bacterial AgentsHumansPseudomonas aeruginosaPyocinsAnti-Bacterial AgentsBacteriocinsPyocinsantibiotic alternativebacteriocinbacteriophageF-type pyocinPseudomonas aeruginosaR-type pyocin

Identifiers

PMID37260386
PMCPMC10294684
OpenAlexW4378952272

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.