Evidence map›Paper›PMID 37258866›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Recovery and Analysis of Long-Read Metagenome-Assembled Genomes.

Krithika Arumugam, Irina Bessarab, Mindia A S Haryono, Rohan B H Williams

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Krithika ArumugamSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore, Singapore.
Irina BessarabSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, Singapore.
Mindia A S HaryonoSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, Singapore.
Rohan B H WilliamsSingapore Centre for Environmental Life Sciences Engineering, National University of Singapore, Singapore, Singapore. lsirbhw@nus.edu.sg.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of long-read nucleic acid sequencing is beginning to make very substantive impact on the conduct of metagenome analysis, particularly in relation to the problem of recovering the genomes of member species of complex microbial communities. Here we outline bioinformatics workflows for the recovery and characterization of complete genomes from long-read metagenome data and some complementary procedures for comparison of cognate draft genomes and gene quality obtained from short-read sequencing and long-read sequencing.

Indexed as

MetagenomeMicrobiotaBase SequenceHigh-Throughput Nucleotide SequencingMetagenomicsSequence Analysis, DNAGenome refinementLong-read sequencingMetagenome assemblyMetagenomicsMicrobiomeMinIONNanopore sequencing

Identifiers

PMID37258866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.