ArticleGenome research2023
Efficient taxa identification using a pangenome index.
Article in Genome research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
8 citing papers in PubMed.
- Article
- Robust 16S rRNA classification based on a compressed LCA index.Genome research · 2025Article
- Mem-based pangenome indexing for k-mer queries.Algorithms for molecular biology : AMB · 2025Article
- Movi: A fast and cache-efficient full-text pangenome index.iScience · 2024Article
- MEM-based pangenome indexing forbioRxiv : the preprint server for biology · 2024Article
- Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.Genome biology · 2024Article
- Movi: a fast and cache-efficient full-text pangenome index.bioRxiv : the preprint server for biology · 2024Article
- Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.bioRxiv : the preprint server for biology · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
Abstract
Tools that classify sequencing reads against a database of reference sequences require efficient index data-structures. The
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.