Evidence map›Paper›PMID 37255458›Full record

ArticleMicrobiology spectrum2023

Copy Number Variation on

Yuliaxis Ramayo-Caldas, Daniel Crespo-Piazuelo, Jordi Morata, Olga González-Rodríguez, Cristina Sebastià, Anna Castello, Antoni Dalmau, Sebastian Ramos-Onsins, Konstantinos G Alexiou, Josep M Folch and 2 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Effects of Copy Number Variations in the Plectin (Animals : an open access journal from MDPI · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Yuliaxis Ramayo-Caldas *Animal Breeding and Genetics Program, Institute of Agrifood Research and Technology, Caldes de Montbui, Spain.ORCID 0000-0002-8142-0159
Daniel Crespo-Piazuelo *Animal Breeding and Genetics Program, Institute of Agrifood Research and Technology, Caldes de Montbui, Spain.
Jordi MorataCentro Nacional de Análisis Genómico, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain.
Olga González-RodríguezAnimal Breeding and Genetics Program, Institute of Agrifood Research and Technology, Caldes de Montbui, Spain.
Cristina SebastiàPlant and Animal Genomics Program, Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas (CSIC)-Institute of Agrifood Research and Technology-Autonomous University of Barcelona-UB, Bellaterra, Spain.
Anna CastelloPlant and Animal Genomics Program, Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas (CSIC)-Institute of Agrifood Research and Technology-Autonomous University of Barcelona-UB, Bellaterra, Spain.
Antoni DalmauAnimal Welfare Program, Institute of Agrifood Research and Technology, Girona, Spain.
Sebastian Ramos-OnsinsPlant and Animal Genomics Program, Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas (CSIC)-Institute of Agrifood Research and Technology-Autonomous University of Barcelona-UB, Bellaterra, Spain.
Konstantinos G AlexiouPlant and Animal Genomics Program, Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas (CSIC)-Institute of Agrifood Research and Technology-Autonomous University of Barcelona-UB, Bellaterra, Spain.
Josep M FolchPlant and Animal Genomics Program, Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas (CSIC)-Institute of Agrifood Research and Technology-Autonomous University of Barcelona-UB, Bellaterra, Spain.
Raquel QuintanillaAnimal Breeding and Genetics Program, Institute of Agrifood Research and Technology, Caldes de Montbui, Spain.
Maria BallesterAnimal Breeding and Genetics Program, Institute of Agrifood Research and Technology, Caldes de Montbui, Spain.
Institute of Agrifood Research and Technology · ESUniversitat Autònoma de Barcelona · ESCentre for Genomic Regulation · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic variation in the pig genome partially modulates the composition of porcine gut microbial communities. Previous studies have been focused on the association between single nucleotide polymorphisms (SNPs) and the gut microbiota, but little is known about the relationship between structural variants and fecal microbial traits. The main goal of this study was to explore the association between porcine genome copy number variants (CNVs) and the diversity and composition of pig fecal microbiota. For this purpose, we used whole-genome sequencing data to undertake a comprehensive identification of CNVs followed by a genome-wide association analysis between the estimated CNV status and the fecal bacterial diversity in a commercial Duroc pig population. A CNV predicted as gain (DUP) partially harboring ABCC2-DNMBP loci was associated with richness (

Indexed as

Genome-Wide Association StudyMicrobiotaAnimalsBacteriaDNA Copy Number VariationsGenomePhenotypeSwinediversitymicrobiotamodulatorsporcinestructural variants

Identifiers

PMID37255458
PMCPMC10433821
OpenAlexW4378783525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.