Evidence map›Paper›PMID 37255402›Full record

ArticleCancer discovery2023

FH Variant Pathogenicity Promotes Purine Salvage Pathway Dependence in Kidney Cancer.

Blake R Wilde, Nishma Chakraborty, Nedas Matulionis, Stephanie Hernandez, Daiki Ueno, Michayla E Gee, Edward D Esplin, Karen Ouyang, Keith Nykamp, Brian Shuch and 1 more

Open access · greenAbstract read
In one paragraph

Article in Cancer discovery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Blake R WildeDepartment of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0000-0002-8372-3954
Nishma Chakraborty *Department of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0000-0003-2100-5428
Nedas Matulionis *Department of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0000-0001-7624-3090
Stephanie Hernandez *Department of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0009-0004-1355-7331
Daiki UenoInstitute of Urologic Oncology, University of California Los Angeles, Los Angeles, California.ORCID 0009-0002-3574-4264
Michayla E GeeDepartment of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0009-0001-5005-6710
Edward D EsplinInvitae, San Francisco, California.ORCID 0000-0001-9205-3756
Karen OuyangInvitae, San Francisco, California.ORCID 0009-0009-5748-1451
Keith NykampInvitae, San Francisco, California.ORCID 0000-0002-1389-5320
Brian ShuchJonsson Comprehensive Cancer Center, University of California Los Angeles, Los Angeles, California.ORCID 0000-0003-2065-3570
Heather R ChristofkDepartment of Biological Chemistry, University of California Los Angeles, Los Angeles, California.ORCID 0000-0002-8662-4425
University of California, Los Angeles · USUniversity of California System · US

Funding

Nutrient Regulation of Cancer Cell GrowthR01CA215185 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Heather Christofk · 2018 to 2026
$4.3M
Metabolic Control of Hair Follicle Stem Cell Homeostasis and TumorigenesisR01AR070245 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHRISTOFK, HEATHER, LOWRY, WILLIAM E · 2018 to 2022
$2.1M
NCI NIH HHS R01 CA215185NIAMS NIH HHS R01 AR070245
6 · The paper itself

Abstract

Fumarate accumulation due to loss of fumarate hydratase (FH) drives cellular transformation. Germline FH alterations lead to hereditary leiomyomatosis and renal cell cancer (HLRCC) where patients are predisposed to an aggressive form of kidney cancer. There is an unmet need to classify FH variants by cancer-associated risk. We quantified catalytic efficiencies of 74 variants of uncertain significance. Over half were enzymatically inactive, which is strong evidence of pathogenicity. We next generated a panel of HLRCC cell lines expressing FH variants with a range of catalytic activities, then correlated fumarate levels with metabolic features. We found that fumarate accumulation blocks de novo purine biosynthesis, rendering FH-deficient cells reliant on purine salvage for proliferation. Genetic or pharmacologic inhibition of the purine salvage pathway reduced HLRCC tumor growth in vivo. These findings suggest the pathogenicity of patient-associated FH variants and reveal purine salvage as a targetable vulnerability in FH-deficient tumors. SIGNIFICANCE: This study functionally characterizes patient-associated FH variants with unknown significance for pathogenicity. This study also reveals nucleotide salvage pathways as a targetable feature of FH-deficient cancers, which are shown to be sensitive to the purine salvage pathway inhibitor 6-mercaptopurine. This presents a new rapidly translatable treatment strategy for FH-deficient cancers. This article is featured in Selected Articles from This Issue, p. 1949.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsSkin NeoplasmsFumarate HydrataseHumansLeiomyomatosisNeoplastic Syndromes, HereditaryPurinesUterine NeoplasmsVirulenceFumarate HydratasePurines

Identifiers

PMID37255402
PMCPMC10527600
OpenAlexW4378782285

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.