Evidence map›Paper›PMID 37254554›Full record

ArticleApplied spectroscopy2023

Rapid Vector-Based Peak Fitting and Resolution Enhancement for Correlation Analyses of Raman Hyperspectra.

H Georg Schulze, Shreyas Rangan, Martha Z Vardaki, Michael W Blades, Robin F B Turner, James M Piret

Abstract read
In one paragraph

Article in Applied spectroscopy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

6 authors.

H Georg SchulzeIndependent, Monte do Tojal, Hortinhas, Terena, Portugal.
Shreyas RanganMichael Smith Laboratories, The University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0001-8614-3894
Martha Z VardakiInstitute of Chemical Biology, National Hellenic Research Foundation, Athens, Greece.ORCID 0000-0002-9624-8363
Michael W BladesDepartment of Chemistry, The University of British Columbia, Vancouver, BC, Canada.
Robin F B TurnerMichael Smith Laboratories, The University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0001-6786-7125
James M PiretMichael Smith Laboratories, The University of British Columbia, Vancouver, BC, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spectroscopic peak parameters are important since they provide information about the analyte under study. Besides obtaining these parameters, peak fitting also resolves overlapped peaks. Thus, the obtained parameters should permit the construction of a higher-resolution version of the original spectrum. However, peak fitting is not an easy task due to computational reasons and because the true nature of the analyte is often unknown. These difficulties are major impediments when large hyperspectral data sets need to be processed rapidly, such as for manufacturing process control. We have developed a novel and relatively fast two-part algorithm to perform peak fitting and resolution enhancement on such data sets. In the first part of the algorithm, estimates of the total number of bands and their parameters were obtained from a representative spectrum in the data set, using a combination of techniques. Starting with these parameter estimates, all the spectra were then iteratively and rapidly fitted with Gaussian bands, exploiting intrinsic features of the Gaussian distribution with vector operations. The best fits for each spectrum were retained. By reducing the obtained bandwidths and commensurately increasing their amplitudes, high-resolution spectra were constructed that greatly improved correlation-based analyses. We tested the performance of the algorithm on synthetic spectra to confirm that this method could recover the ground truth correlations between highly overlapped peaks. To assess effective peak resolution, the method was applied to low-resolution spectra of glucose and compared to results from high-resolution spectra. We then processed a larger spectral data set from mammalian cells, fixed with methanol or air drying, to demonstrate the resolution enhancement of the algorithm on complex spectra and the effects of resolution-enhanced spectra on two-dimensional correlation spectroscopy and principal component analyses. The results indicated that the algorithm would allow users to obtain high-resolution spectra relatively fast and permit the recovery of important aspects of the data's intrinsic correlation structure.

Indexed as

2D-COScorrelation structureGaussian distributionsmammalian cellsPCApeak fittingprincipal component analysisRaman spectroscopyresolution enhancementtwo-dimensional correlation spectroscopy

Identifiers

PMID37254554
PMCPMC10543951

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