Evidence map›Paper›PMID 37253112›Full record

ArticleCancer research2023

Functional and Clinical Characterization of Variants of Uncertain Significance Identifies a Hotspot for Inactivating Missense Variants in RAD51C.

Chunling Hu, Anil Belur Nagaraj, Hermela Shimelis, Gemma Montalban, Kun Y Lee, Huaizhi Huang, Carolyn A Lumby, Jie Na, Lisa R Susswein, Maegan E Roberts and 34 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 15 institutions in 2 countries.

Chunling Hu *Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-6814-4639
Anil Belur Nagaraj *Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-7627-0555
Hermela Shimelis *Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-1284-8909
Gemma Montalban *CHU de Quebec-Université Laval Research Center, Université Laval, Quebec City, Quebec, Canada.ORCID 0000-0002-6958-4759
Kun Y LeeMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-0684-8112
Huaizhi HuangMayo Clinic, Rochester, Minnesota.ORCID 0009-0001-6186-7228
Carolyn A LumbyMayo Clinic, Rochester, Minnesota.ORCID 0009-0004-1374-9253
Jie NaMayo Clinic, Rochester, Minnesota.ORCID 0000-0003-3435-1805
Lisa R SussweinGeneDx, Gaithersburg, Maryland.ORCID 0000-0003-4222-5251
Maegan E RobertsGeneDx, Gaithersburg, Maryland.ORCID 0000-0002-0292-2557
Megan L MarshallGeneDx, Gaithersburg, Maryland.ORCID 0000-0002-4095-0858
Susan HirakiGeneDx, Gaithersburg, Maryland.ORCID 0000-0001-9799-2402
Holly LaDucaAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-3745-9072
Elizabeth ChaoAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-4082-371X
Amal YussufAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-7876-2713
Tina PesaranAmbry Genetics, Aliso Viejo, California.ORCID 0000-0001-9807-4304
Susan L NeuhausenBeckman Research Institute of City of Hope, Duarte, California.ORCID 0000-0001-5053-0390
Christopher A HaimanKeck School of Medicine, University of Southern California, Los Angeles, California.ORCID 0000-0002-0097-9971
Peter KraftT.H. Chan School of Public Health, Harvard University, Boston, Massachusetts.ORCID 0000-0002-4472-8103
Sara LindstromDepartment of Epidemiology, University of Washington, Seattle, Washington.ORCID 0000-0002-7137-7281
Julie R PalmerSlone Epidemiology Center at Boston University, Boston, Massachusetts.ORCID 0000-0002-6534-335X
Lauren R TerasBehavioral and Epidemiology Research Group, American Cancer Society, Atlanta, Georgia.ORCID 0000-0003-2419-8536
Celine M VachonMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-1962-9322
Song YaoRoswell Park Comprehensive Cancer Center, Buffalo, New York.ORCID 0000-0001-9442-1313
Irene OngUniversity of Wisconsin-Madison, Madison, Wisconsin.ORCID 0000-0002-9353-6941
Katherine L NathansonUniversity of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0002-6740-0901
Jeffrey N WeitzelLatin American School of Oncology, Sierra Madre, California.ORCID 0000-0001-6714-092X
Nicholas BoddickerMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-6784-2072
Rohan GnanaolivuMayo Clinic, Rochester, Minnesota.ORCID 0000-0001-6995-6340
Eric C PolleyUniversity of Chicago, Chicago, Illinois.ORCID 0000-0002-5152-8740
Georges MerMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-1900-1578
Gaofeng CuiMayo Clinic, Rochester, Minnesota.ORCID 0000-0001-5267-9033
Rachid KaramAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-5645-498X
Marcy E RichardsonAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-4626-4920
Susan M DomchekUniversity of Pennsylvania, Philadelphia, Pennsylvania.ORCID 0000-0002-5914-7272
Siddhartha YadavMayo Clinic, Rochester, Minnesota.ORCID 0000-0003-4630-9903
Kathleen S HruskaGeneDx, Gaithersburg, Maryland.ORCID 0000-0001-8468-2843
Jill DolinskyAmbry Genetics, Aliso Viejo, California.ORCID 0000-0002-3854-9539
S John WerohaMayo Clinic, Rochester, Minnesota.ORCID 0000-0002-7130-7259
Steven N HartMayo Clinic, Rochester, Minnesota.ORCID 0000-0001-7714-2734
Jacques SimardCHU de Quebec-Université Laval Research Center, Université Laval, Quebec City, Quebec, Canada.ORCID 0000-0001-6906-3390
Jean Yves MassonCHU de Quebec-Université Laval Research Center, Université Laval, Quebec City, Quebec, Canada.ORCID 0000-0002-4403-7169
Yuan-Ping PangMayo Clinic, Rochester, Minnesota.ORCID 0000-0003-0838-2560
Fergus J CouchMayo Clinic, Rochester, Minnesota.ORCID 0000-0001-9417-9985
Mayo Clinic · USAmbry Genetics (United States) · USOpGen (United States) · USUniversité Laval · CAUniversity of Pennsylvania · USAmerican Cancer Society · USBoston University · USCity Of Hope National Medical Center · USHarvard University · USRoswell Park Comprehensive Cancer Center · USThe University of Kansas Cancer Center · USUniversity of Illinois Chicago · USUniversity of Southern California · USUniversity of Washington · USUniversity of Wisconsin–Madison · US

Funding

The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI Fergus Joseph Couch · 2005 to 2026
$49.9M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Trevor M Penning · 2006 to 2026
$35.3M
Resolving the cancer relevance of predisposition gene mutationsR35CA253187 · NCI · MAYO CLINIC ROCHESTER · PI Fergus Joseph Couch · 2020 to 2026
$5.8M
The contribution of RAD51C and RAD51D to breast and ovarian cancerR01CA225662 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH, WEROHA, SARAVUT · 2018 to 2024
$2.5M
NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA225662NCI NIH HHS R35 CA253187NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

Pathogenic protein-truncating variants of RAD51C, which plays an integral role in promoting DNA damage repair, increase the risk of breast and ovarian cancer. A large number of RAD51C missense variants of uncertain significance (VUS) have been identified, but the effects of the majority of these variants on RAD51C function and cancer predisposition have not been established. Here, analysis of 173 missense variants by a homology-directed repair (HDR) assay in reconstituted RAD51C-/- cells identified 30 nonfunctional (deleterious) variants, including 18 in a hotspot within the ATP-binding region. The deleterious variants conferred sensitivity to cisplatin and olaparib and disrupted formation of RAD51C/XRCC3 and RAD51B/RAD51C/RAD51D/XRCC2 complexes. Computational analysis indicated the deleterious variant effects were consistent with structural effects on ATP-binding to RAD51C. A subset of the variants displayed similar effects on RAD51C activity in reconstituted human RAD51C-depleted cancer cells. Case-control association studies of deleterious variants in women with breast and ovarian cancer and noncancer controls showed associations with moderate breast cancer risk [OR, 3.92; 95% confidence interval (95% CI), 2.18-7.59] and high ovarian cancer risk (OR, 14.8; 95% CI, 7.71-30.36), similar to protein-truncating variants. This functional data supports the clinical classification of inactivating RAD51C missense variants as pathogenic or likely pathogenic, which may improve the clinical management of variant carriers. SIGNIFICANCE: Functional analysis of the impact of a large number of missense variants on RAD51C function provides insight into RAD51C activity and information for classification of the cancer relevance of RAD51C variants.

Indexed as

Breast NeoplasmsDNA-Binding ProteinsOvarian NeoplasmsAdenosine TriphosphateFemaleGenetic Predisposition to DiseaseHumansMutation, MissenseAdenosine TriphosphateDNA-Binding ProteinsRAD51C protein, humanXRCC2 protein, human

Identifiers

PMID37253112
PMCPMC10390864
OpenAlexW4378781378

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.