Evidence map›Paper›PMID 37252686›Full record

ArticleProtein science : a publication of the Protein Society2023

Ordered-domain unfolding of thermophilic isolated β subunit ATP synthase.

Edgar López-Pérez, Marietta Tuena de Gómez-Puyou, Concepción José Nuñez, Denise Martínez Zapién, Salomón Alas Guardado, Hiram Isaac Beltrán, Gerardo Pérez-Hernández

Erratum issuedAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Ordered-domain unfolding of thermophilic isolated β subunit ATP synthase.Protein science : a publication of the Protein Society · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Edgar López-PérezUnidad Cuajimalpa, Departamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Ciudad de México, Mexico.
Marietta Tuena de Gómez-PuyouDepartamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Ciudad de México, Mexico.
Concepción José NuñezDepartamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Ciudad de México, Mexico.
Denise Martínez ZapiénUnidad Cuajimalpa, Departamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Ciudad de México, Mexico.
Salomón Alas GuardadoUnidad Cuajimalpa, Departamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Ciudad de México, Mexico.
Hiram Isaac BeltránDivisión de Ciencias Básicas e Ingeniería, Departamento de Ciencias Básicas, Universidad Autónoma Metropolitana, Unidad Azcapotzalco, Ciudad de México, Mexico.
Gerardo Pérez-HernándezUnidad Cuajimalpa, Departamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Ciudad de México, Mexico.ORCID 0000-0003-3290-4875

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The flexibility of the ATP synthase's β subunit promotes its role in the ATP synthase rotational mechanism, but its domains stability remains unknown. A reversible thermal unfolding of the isolated β subunit (Tβ) of the ATP synthase from Bacillus thermophilus PS3, tracked through circular dichroism and molecular dynamics, indicated that Tβ shape transits from an ellipsoid to a molten globule through an ordered unfolding of its domains, preserving the β-sheet residual structure at high temperature. We determined that part of the stability origin of Tβ is due to a transversal hydrophobic array that crosses the β-barrel formed at the N-terminal domain and the Rossman fold of the nucleotide-binding domain (NBD), while the helix bundle of the C-terminal domain is the less stable due to the lack of hydrophobic residues, and thus the more flexible to trigger the rotational mechanism of the ATP synthase.

Indexed as

Hot TemperatureMolecular Dynamics SimulationAdenosine TriphosphateCircular DichroismProtein DenaturationProtein FoldingProtein Structure, SecondaryAdenosine Triphosphatecircular dichroismfree energy landscapemolecular dynamicsordered domainsprotein unfolding

Identifiers

PMID37252686
PMCPMC10273367

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.