Evidence map›Paper›PMID 37252349›Full record

ArticleACS central science2023

Rational Chemical Design of Molecular Glue Degraders.

Ethan S Toriki, James W Papatzimas, Kaila Nishikawa, Dustin Dovala, Andreas O Frank, Matthew J Hesse, Daniela Dankova, Jae-Geun Song, Megan Bruce-Smythe, Heidi Struble and 8 more

Erratum issuedOpen access · diamondAbstract read
In one paragraph

Article in ACS central science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
25.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Covalent Reprogramming of Kinase Binders to Modulate Protein Abundance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Induced proximity-based therapeutic modalities.Nature reviews. Drug discovery · 2026
    Review
  20. Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 1 country.

Ethan S TorikiDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
James W PapatzimasDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0001-8944-1037
Kaila NishikawaDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Dustin DovalaNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Andreas O FrankNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0002-2330-3974
Matthew J HesseNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Daniela DankovaDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Jae-Geun SongNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Megan Bruce-SmytheNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Heidi StrubleNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Francisco J GarciaNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Scott M BrittainNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Andrew C KileNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Lynn M McGregorNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0003-4310-2384
Jeffrey M McKennaNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
John A TallaricoNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
Markus SchirleNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0003-4933-2623
Daniel K NomuraDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0003-1614-8360
Novartis (United States) · USInnovative Genomics Institute · US

Funding

Tackling Undruggable Cancer Targets using Chemoproteomic PlatformsR35CA263814 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniel Nomura · 2022 to 2026
$4.6M
Harnessing E3 Ligases for Cancer TherapyR01CA240981 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniel Nomura · 2019 to 2026
$4.3M
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
NCI NIH HHS R01 CA240981NCI NIH HHS R35 CA263814NIH HHS S10 OD024998
6 · The paper itself

Abstract

Targeted protein degradation with molecular glue degraders has arisen as a powerful therapeutic modality for eliminating classically undruggable disease-causing proteins through proteasome-mediated degradation. However, we currently lack rational chemical design principles for converting protein-targeting ligands into molecular glue degraders. To overcome this challenge, we sought to identify a transposable chemical handle that would convert protein-targeting ligands into molecular degraders of their corresponding targets. Using the CDK4/6 inhibitor ribociclib as a prototype, we identified a covalent handle that, when appended to the exit vector of ribociclib, induced the proteasome-mediated degradation of CDK4 in cancer cells. Further modification of our initial covalent scaffold led to an improved CDK4 degrader with the development of a but-2-ene-1,4-dione ("fumarate") handle that showed improved interactions with RNF126. Subsequent chemoproteomic profiling revealed interactions of the CDK4 degrader and the optimized fumarate handle with RNF126 as well as additional RING-family E3 ligases. We then transplanted this covalent handle onto a diverse set of protein-targeting ligands to induce the degradation of BRD4, BCR-ABL and c-ABL, PDE5, AR and AR-V7, BTK, LRRK2, HDAC1/3, and SMARCA2/4. Our study undercovers a design strategy for converting protein-targeting ligands into covalent molecular glue degraders.

Identifiers

PMID37252349
PMCPMC10214506
OpenAlexW4364356934

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.