Evidence map›Paper›PMID 37251379›Full record

ArticleFrontiers in immunology2023

Combined analysis of single-cell and bulk RNA sequencing reveals the expression patterns of circadian rhythm disruption in the immune microenvironment of Alzheimer's disease.

Huiling He, Yingxia Yang, Lingxing Wang, Zeming Guo, Lichao Ye, Wanjiong Ou-Yang, Meili Yang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 20 citations in OpenAlex.

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  19. A glance through the effects of CD4Computational and structural biotechnology journal · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Huiling HeDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Yingxia YangDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Lingxing WangDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Zeming GuoDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Lichao YeDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Wanjiong Ou-YangDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Meili YangDepartment of Neurology, The Second Attached Hospital of Fujian Medical University, Quanzhou, Fujian, China.
Fujian Medical University · CNSecond Affiliated Hospital of Fujian Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Circadian rhythm disruption (CRD) represents a critical contributor to the pathogenesis of Alzheimer's disease (AD). Nonetheless, how CRD functions within the AD immune microenvironment remains to be illustrated. Methods: Circadian rhythm score (CRscore) was utilized to quantify the microenvironment status of circadian disruption in a single-cell RNA sequencing dataset derived from AD. Bulk transcriptome datasets from public repository were employed to validate the effectiveness and robustness of CRscore. A machine learning-based integrative model was applied for constructing a characteristic CRD signature, and RT-PCR analysis was employed to validate their expression levels. Results: We depicted the heterogeneity in B cells, CD4 Conclusion: Our study revealed CRD-based cell subtypes in the AD microenvironment at single-cell level and proposed a robust and promising CRD signature for AD diagnosis. A deeper knowledge of these mechanisms may provide novel possibilities for incorporating "circadian rhythm-based anti-dementia therapies" into the treatment protocols of individualized medicine.

Indexed as

Alzheimer DiseaseCD8-Positive T-LymphocytesCircadian RhythmHumansSEC Translocation ChannelsSequence Analysis, RNATranscriptomeSEC61G protein, humanSEC Translocation ChannelsAlzheimer’s diseasecircadian rhythmimmune microenvironmentmachine learningsingle-cell

Identifiers

PMID37251379
PMCPMC10213546
OpenAlexW4378744919

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.