Evidence map›Paper›PMID 37250316›Full record

ArticleiScience2023

Single-cell proteo-genomic reveals a comprehensive map of centrosome-associated spliceosome components.

Luigi Cerulo, Nunziana Pezzella, Francesca Pia Caruso, Paola Parente, Andrea Remo, Guido Giordano, Nicola Forte, Johan Busselez, Federico Boschi, Mirco Galiè and 2 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 10 institutions in 3 countries.

Luigi CeruloBioinformatics Laboratory, BIOGEM scrl, Ariano Irpino, Avellino, Italy.
Nunziana PezzellaTelethon Institute of Genetics and Medicine (TIGEM), Via Campi Flegrei, 34, Pozzuoli, 80078 Naples, Italy.
Francesca Pia CarusoBioinformatics Laboratory, BIOGEM scrl, Ariano Irpino, Avellino, Italy.
Paola ParenteUnit of Pathology, Fondazione IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, Foggia, Italy.
Andrea RemoPathology Unit, Mater Salutis Hospital AULSS9, "Scaligera", 37122 Verona, Italy.
Guido GiordanoUnit of Medical Oncology and Biomolecular Therapy, Department of Medical and Surgical Sciences, University of Foggia, Policlinico Riuniti, 71122 Foggia, Italy.
Nicola ForteDepartment of Clinical Pathology, Fatebenefratelli Hospital, 82100 Benevento, Italy.
Johan BusselezInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Federico BoschiDepartment of Computer Science, University of Verona, Strada Le Grazie 8, Verona, Italy.
Mirco GalièDepartment of Neuroscience, Biomedicine and Movement, University of Verona, Verona, Italy.
Brunella FrancoTelethon Institute of Genetics and Medicine (TIGEM), Via Campi Flegrei, 34, Pozzuoli, 80078 Naples, Italy.
Massimo PancioneDepartment of Sciences and Technologies, University of Sannio, Benevento, Italy.
University of Verona · ITBiogem · ITCasa Sollievo della Sofferenza · ITFatebenefratelli Hospital · ITInstitut de génétique et de biologie moléculaire et cellulaire · FRIstituto Universitario di Studi Superiori di Pavia · ITStazione Sperimentale per l'Industria delle Pelli e delle Materie Concianti · ITUniversidad Complutense de Madrid · ESUniversity of Foggia · ITUniversity of Sannio · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribonucleoprotein (RNP) condensates are crucial for controlling RNA metabolism and splicing events in animal cells. We used spatial proteomics and transcriptomic to elucidate RNP interaction networks at the centrosome, the main microtubule-organizing center in animal cells. We found a number of cell-type specific centrosome-associated spliceosome interactions localized in subcellular structures involved in nuclear division and ciliogenesis. A component of the nuclear spliceosome BUD31 was validated as an interactor of the centriolar satellite protein OFD1. Analysis of normal and disease cohorts identified the cholangiocarcinoma as target of centrosome-associated spliceosome alterations. Multiplexed single-cell fluorescent microscopy for the centriole linker CEP250 and spliceosome components including BCAS2, BUD31, SRSF2 and DHX35 recapitulated bioinformatic predictions on the centrosome-associated spliceosome components tissue-type specific composition. Collectively, centrosomes and cilia act as anchor for cell-type specific spliceosome components, and provide a helpful reference for explore cytoplasmic condensates functions in defining cell identity and in the origin of rare diseases.

Indexed as

BiochemistryCell biologyGenomicsProteomics

Identifiers

PMID37250316
PMCPMC10214398
OpenAlexW4362736784

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.