Evidence map›Paper›PMID 37250124›Full record

ArticleFrontiers in physiology2023

WGCNA based identification of hub genes associated with cold response and development in

Chenyu Zhu, Xinjian Xu, Shujing Zhou, Bingfeng Zhou, Yiming Liu, Hongzhi Xu, Yuanmingyue Tian, Xiangjie Zhu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Chenyu ZhuCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Xinjian XuCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Shujing ZhouCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Bingfeng ZhouCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Yiming LiuCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Hongzhi XuCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Yuanmingyue TianCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Xiangjie ZhuCollege of Animal Science (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou, China.
Fujian Agriculture and Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Honeybee is a crucial pollinator in nature, and plays an indispensable role in both agricultural production and scientific research. In recent decades, honeybee was challenged with health problems by biotic and abiotic stresses. As a key ecological factor, temperature has been proved to have an impact on the survival and production efficiency of honeybees. Previous studies have demonstrated that low temperature stress can affect honeybee pupation and shorten adult longevity. However, the molecular mechanism underlying the effects of low temperatures on honeybee growth and development during their developmental period remain poorly understood. In this paper, the weighted gene co-expression analysis (WGCNA) was employed to explore the molecular mechanisms underpinnings of honeybees' respond to low temperatures (20°C) during four distinct developmental stages: large-larvae, prepupae, early-pupae and mid-pupae. Through an extensive transcriptome analysis, thirteen gene co-expression modules were identified and analyzed in relation to honeybee development and stress responses. The darkorange module was found to be associated with low temperature stress, with its genes primarily involved in autophagy-animal, endocytosis and MAPK signaling pathways. Four hub genes were identified within this module, namely, loc726497, loc409791, loc410923, and loc550857, which may contribute to honeybee resistance to low temperature and provide insight into the underlying mechanism. The gene expression patterns of grey60 and black modules were found to correspond to the developmental stages of prepupae and early-pupae, respectively, with the hub genes loc409494, loc725756, loc552457, loc726158,

Indexed as

cold responsedevelopmenthoneybeehub genespupaeWGCNA

Identifiers

PMID37250124
PMCPMC10213956
OpenAlexW4368367910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.