Evidence map›Paper›PMID 37249889›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Unraveling Plant-Pathogen Interactions in Cereals Using RNA-seq.

Bronwyn E Rowland, Maria Antonia Henriquez, Kirby T Nilsen, Rajagopal Subramaniam, Sean Walkowiak

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bronwyn E RowlandDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada.
Maria Antonia HenriquezMorden Research and Development Centre, Agriculture and Agri-Food Canada, Morden, MB, Canada.
Kirby T NilsenBrandon Research and Development Centre, Agriculture and Agri-Food Canada, Brandon, MB, Canada. kirby.nilsen@agr.gc.ca.
Rajagopal SubramaniamOttawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada. rajagopal.subramaniam@agr.gc.ca.
Sean WalkowiakGrain Research Laboratory, Canadian Grain Commission, Winnipeg, MB, Canada. sean.walkowiak@grainscanada.gc.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the past two decades, there have been significant advancements in the realm of transcriptomics, or the study of genes and their expression. Modern RNA sequencing technologies and high-performance computing are creating a "big data" revolution that provides new opportunities to explore the interactions between cereals and pathogens that affect grain yield and food safety. These data are being used to annotate genes and gene variants, as well as identify differentially expressed genes and create global gene co-expression networks. Moreover, these data can unravel the complex interactions between pathogen and host and identify genes and pathways involved in these interactions. This information can then be used for disease mitigation and the development of crops with superior resistance.

Indexed as

Edible GrainFusariumHost-Pathogen InteractionsPlant DiseasesRNA-SeqTriticumBioinformaticsCerealsFusarium graminearumPathogensRNA-seqTranscriptomeWheat

Identifiers

PMID37249889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.