Evidence map›Paper›PMID 37248328›Full record

ArticleNature aging2023

Human microglia show unique transcriptional changes in Alzheimer's disease.

Katherine E Prater, Kevin J Green, Sainath Mamde, Wei Sun, Alexandra Cochoit, Carole L Smith, Kenneth L Chiou, Laura Heath, Shannon E Rose, Jesse Wiley and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Nature aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 140 citations in OpenAlex.

  1. Targeting Microglial Transcriptional Reprogramming as a Therapy Strategy for Alzheimer's Disease.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Review
  3. Increased Amyloidogenic Neuronal Injury in HIV-1-infected APP-KI Alzheimer's disease mice.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Single-cell analysis of microglia and monocyte dynamics uncovers distinct TNF-driven neuroimmune signatures in humans after intracerebral hemorrhage.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Katherine E Prater *Department of Neurology, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8615-207X
Kevin J Green *Department of Neurology, University of Washington, Seattle, WA, USA.
Sainath MamdeDepartment of Neurology, University of Washington, Seattle, WA, USA.
Wei SunBiostatistics Program, Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Alexandra CochoitDepartment of Neurology, University of Washington, Seattle, WA, USA.ORCID 0009-0005-8022-2459
Carole L SmithDepartment of Neurology, University of Washington, Seattle, WA, USA.
Kenneth L ChiouCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.
Laura HeathSage Bionetworks, Seattle, WA, USA.ORCID 0000-0002-0318-2773
Shannon E RoseDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Jesse WileySage Bionetworks, Seattle, WA, USA.
C Dirk KeeneDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.ORCID 0000-0002-5291-1469
Ronald Y KwonInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, USA.
Noah Snyder-MacklerCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.ORCID 0000-0003-3026-6160
Elizabeth E BlueDivision of Medical Genetics, University of Washington, Seattle, WA, USA.ORCID 0000-0002-0633-0305
Benjamin LogsdonSage Bionetworks, Seattle, WA, USA.
Jessica E YoungDepartment of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.
Ali ShojaieDepartment of Biostatistics, University of Washington, Seattle, WA, USA.
Gwenn A GardenDepartment of Neurology, University of North Carolina, Chapel Hill, NC, USA.
Suman JayadevDepartment of Neurology, University of Washington, Seattle, WA, USA. sumie@uw.edu.ORCID 0000-0003-3164-9665
University of Washington · USSage Bionetworks · USArizona State University · USCalifornia Institute for Regenerative Medicine · USFred Hutch Cancer Center · USUniversity of North Carolina at Chapel Hill · USUniversity of Washington Medical Center · US

Funding

THERAPEUTIC EFFECTS OF INTRA-NASAL INSULIN DETEMIRP50AG005136 · NIA · UNIVERSITY OF WASHINGTON · PI GRABOWSKI, THOMAS J. · 1985 to 2019
$57.2M
Furthering scientific understanding of mechanisms underlying resilience to the effects of AD pathology by incorporating state of the art quantification of gliosis, inflammation, & synaptic toxicityU01AG006781 · NIA · UNIVERSITY OF WASHINGTON · PI CRANE, PAUL K, LARSON, ERIC B · 1986 to 2020
$39.3M
University of Washington Alzheimer's Disease Research CenterP30AG066509 · NIA · UNIVERSITY OF WASHINGTON · PI Amanda D. Boyd · 2020 to 2026
$29.0M
Tox-AD: a new multi-institute tri-consortium data resource in the AD Knowledge PortalU24AG061340 · NIA · SAGE BIONETWORKS · PI Laura Michelle Heath, Susheel Varma · 2018 to 2026
$24.6M
Mechanisms of Brain Dysmorphology in MN1 C-Terminal Truncation Syndrome, a Novel Intellectual Developmental Disability Disorder P50HD103524 · NICHD · UNIVERSITY OF WASHINGTON · PI Sandra E Juul · 2020 to 2026
$9.9M
Neurobehavior, Neuropathology, and Risk Factors in Alzheimer's DiseaseT32AG052354 · NIA · UNIVERSITY OF WASHINGTON · PI Brian C. Kraemer, ELAINE R. PESKIND · 2016 to 2026
$6.7M
Dissecting the role of sex-linked genes and APOE e4 risk in ADR01AG073918 · NIA · UNIVERSITY OF WASHINGTON · PI DISTECHE, CHRISTINE M., JAYADEV, SUMAN · 2021 to 2025
$5.9M
Understanding the functional impact of cumulative genetic risk in Alzheimer DiseaseRF1AG063540 · NIA · UNIVERSITY OF WASHINGTON · PI GARDEN, GWENN A, JAYADEV, SUMAN · 2019 to 2020
$4.6M
Social and dietary modifiers of neuroinflammation and agingK99AG075241 · NIA · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CHIOU, KENNETH LYU · 2022 to 2023
$243k
NIA NIH HHS K99 AG075241NIA NIH HHS P30 AG066509NIA NIH HHS P50 AG005136NIA NIH HHS R01 AG073918NIA NIH HHS RF1 AG063540NIA NIH HHS T32 AG052354NIA NIH HHS U01 AG006781NIA NIH HHS U24 AG061340NICHD NIH HHS P50 HD103524
6 · The paper itself

Abstract

Microglia, the innate immune cells of the brain, influence Alzheimer's disease (AD) progression and are potential therapeutic targets. However, microglia exhibit diverse functions, the regulation of which is not fully understood, complicating therapeutics development. To better define the transcriptomic phenotypes and gene regulatory networks associated with AD, we enriched for microglia nuclei from 12 AD and 10 control human dorsolateral prefrontal cortices (7 males and 15 females, all aged >60 years) before single-nucleus RNA sequencing. Here we describe both established and previously unrecognized microglial molecular phenotypes, the inferred gene networks driving observed transcriptomic change, and apply trajectory analysis to reveal the putative relationships between microglial phenotypes. We identify microglial phenotypes more prevalent in AD cases compared with controls. Further, we describe the heterogeneity in microglia subclusters expressing homeostatic markers. Our study demonstrates that deep profiling of microglia in human AD brain can provide insight into microglial transcriptional changes associated with AD.

Indexed as

Alzheimer DiseaseBrainFemaleGene Expression ProfilingHumansMaleMicrogliaTranscriptome

Identifiers

PMID37248328
PMCPMC10353942
OpenAlexW4378714758

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.