Evidence map›Paper›PMID 37248251›Full record

ArticleScientific reports2023

Identification of prognostic hub genes and therapeutic targets for selenium deficiency in chicks model through transcriptome profiling.

Lakshman Kumar Lingamgunta, Bindu Prasuna Aloor, Sreenivasulu Dasari, Ranjani Ramakrishnan, Mahendran Botlagunta, Ashok Kumar Madikonda, Shankar Gopal, Ankanna Sade

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Mechanistic studies ofFrontiers in oncology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Lakshman Kumar LingamguntaDepartment of Biochemistry, Sri Venkateswara University, Tirupati, 517502, Andhra Pradesh, India. laxman.lingam@gmail.com.
Bindu Prasuna AloorDepartment of Botany, Rayalaseema University, Kurnool, 518002, Andhra Pradesh, India.
Sreenivasulu DasariDepartment of Biochemistry, Sri Venkateswara University, Tirupati, 517502, Andhra Pradesh, India.
Ranjani RamakrishnanDepartment of Virology, Sri Venkateswara University, Tirupati, 517502, Andhra Pradesh, India.
Mahendran BotlaguntaSchool of Biosciences, Engineering and Technology, Vellore Institute of Technology (VIT), Bhopal, 466114, Madhya Pradesh, India.
Ashok Kumar MadikondaDepartment of Biochemistry & Molecular Biology, Central University of Kerala, Periye, 671316, Kerala, India.
Shankar GopalDepartment of Biochemistry, Sri Venkateswara University, Tirupati, 517502, Andhra Pradesh, India.
Ankanna SadeDepartment of Botany, Sri Venkateswara University, Tirupati, 517502, Andhra Pradesh, India.
Sri Venkateswara University · INCentral University of Kerala · INRayalaseema University · INVellore Institute of Technology University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Selenium deficiency is a prevalent micronutrient deficiency that poses a major health concern worldwide. This study aimed to shed light on the molecular mechanisms underlying selenium deficiency using a chick model. Chickens were divided into control and selenium deficient groups. Plasma samples were collected to measure selenium concentration and transcriptome analyse were performed on oviduct samples. The results showed that selenium deficiency led to a significant reduction in plasma selenium levels and altered the expression of 10,266 differentially expressed genes (DEGs). These DEGs primarily regulated signal transduction and cell motility. The molecular function includes GTPase regulatory activity, and KEGG pathway analysis showed that they were mainly involved in the signal transduction. By using Cytoscape and CancerGeneNet tool, we identified 8 modules and 10 hub genes (FRK, JUN, PTPRC, ACTA2, MST1R, SDC4, SDC1, CXCL12, MX1 and EZR) associated with receptor tyrosine kinase pathway, Wnt and mTOR signaling pathways that may be closely related to cancer. These hub genes could be served as precise diagnostic and prognostic candidate biomarkers of selenium deficiency and potential targets for treatment strategies in both animals and humans. This study sheds light on the molecular basis of selenium deficiency and its potential impact on public health.

Indexed as

ChickensSeleniumAnimalsComputational BiologyGene Expression ProfilingGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansPrognosisProtein Interaction MapsTranscriptomeSelenium

Identifiers

PMID37248251
PMCPMC10226025
OpenAlexW4378717710

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.