Evidence map›Paper›PMID 37248224›Full record

ArticleNature communications2023

Multi-omic approach characterises the neuroprotective role of retromer in regulating lysosomal health.

James L Daly, Chris M Danson, Philip A Lewis, Lu Zhao, Sara Riccardo, Lucio Di Filippo, Davide Cacchiarelli, Daehoon Lee, Stephen J Cross, Kate J Heesom and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 40 citations in OpenAlex.

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  12. Identification of a VPS29 isoform with restricted association to Retriever and Retromer accessory proteins through autoinhibition.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  15. COVID-19 Alters Inflammatory, Mitochondrial, and Protein Clearance Pathway Genes: Potential Implications for New-onset Parkinsonism in Patients.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

James L Daly *School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol, BS8 1TD, UK. james.l.daly@kcl.ac.uk.ORCID 0000-0002-4551-1256
Chris M Danson *School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol, BS8 1TD, UK.
Philip A LewisBristol Proteomics Facility, School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, BS8 1TD, Bristol, UK.ORCID 0000-0002-2868-2459
Lu ZhaoDepartment of Neurosciences, Case Western Reserve University, Cleveland, OH, USA.
Sara RiccardoTelethon Institute of Genetics and Medicine, Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Lucio Di FilippoTelethon Institute of Genetics and Medicine, Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Davide CacchiarelliTelethon Institute of Genetics and Medicine, Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.ORCID 0000-0002-9621-6716
Daehoon LeeDepartment of Neurosciences, Case Western Reserve University, Cleveland, OH, USA.
Stephen J CrossWolfson Bioimaging Facility, Faculty of Biomedical Sciences, University of Bristol, Bristol, UK.ORCID 0000-0003-3565-0479
Kate J HeesomBristol Proteomics Facility, School of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, BS8 1TD, Bristol, UK.ORCID 0000-0002-5418-5392
Wen-Cheng XiongDepartment of Neurosciences, Case Western Reserve University, Cleveland, OH, USA.ORCID 0000-0001-9071-7598
Andrea BallabioTelethon Institute of Genetics and Medicine, Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.ORCID 0000-0003-1381-4604
James R EdgarDepartment of Pathology, Cambridge University, Tennis Court Road, Cambridge, UK.ORCID 0000-0001-7903-8199
Peter J CullenSchool of Biochemistry, Biomedical Sciences Building, University Walk, University of Bristol, Bristol, BS8 1TD, UK. pete.cullen@bristol.ac.uk.ORCID 0000-0002-9070-8349
University of Bristol · GBCase Western Reserve University · USTelethon Institute Of Genetics And Medicine · ITBaylor College of Medicine · USFederico II University Hospital · ITGuy's Hospital · GBUniversity of Cambridge · GB

Funding

Retromer deficiency and Alzheimer's disease pathologyRF1AG045781 · NIA · CASE WESTERN RESERVE UNIVERSITY · PI XIONG, WEN-CHENG · 2019 to 2019
$2.0M
Medical Research Council MR/K018299/1Medical Research Council MR/L007363/1Medical Research Council MR/P018807/1NIA NIH HHS RF1 AG045781Wellcome Trust 104568/Z/14/ZWellcome Trust 203959/Z/16/ZWellcome Trust 220260/Z/20/ZWellcome Trust 225128/Z/22/Z
6 · The paper itself

Abstract

Retromer controls cellular homeostasis through regulating integral membrane protein sorting and transport and by controlling maturation of the endo-lysosomal network. Retromer dysfunction, which is linked to neurodegenerative disorders including Parkinson's and Alzheimer's diseases, manifests in complex cellular phenotypes, though the precise nature of this dysfunction, and its relation to neurodegeneration, remain unclear. Here, we perform an integrated multi-omics approach to provide precise insight into the impact of Retromer dysfunction on endo-lysosomal health and homeostasis within a human neuroglioma cell model. We quantify widespread changes to the lysosomal proteome, indicative of broad lysosomal dysfunction and inefficient autophagic lysosome reformation, coupled with a reconfigured cell surface proteome and secretome reflective of increased lysosomal exocytosis. Through this global proteomic approach and parallel transcriptomic analysis, we provide a holistic view of Retromer function in regulating lysosomal homeostasis and emphasise its role in neuroprotection.

Indexed as

MultiomicsNeuroprotectionEndosomesHumansLysosomesProtein TransportProteomeProteomicsProteome

Identifiers

PMID37248224
PMCPMC10227043
OpenAlexW4378715931

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.