Evidence map›Paper›PMID 37246647›Full record

ArticleNucleic acids research2023

Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6.

Joshua Meehan, Suzanne M McDermott, Alasdair Ivens, Zachary Goodall, Zihao Chen, Zihao Yu, Jia Woo, Tyler Rodshagen, Laura McCleskey, Rebecca Sechrist and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Joshua MeehanDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Suzanne M McDermottCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA 98109, USA.
Alasdair IvensDepartments of Pediatrics and Global Health, University of Washington School of Medicine, Seattle, WA, USA.
Zachary GoodallDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Zihao ChenInstitute of Immunology and Infection Research, University of Edinburgh, Edinburgh EH9 3FL, UK.
Zihao YuDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Jia WooDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA.
Tyler RodshagenCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA 98109, USA.
Laura McCleskeyDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Rebecca SechristDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Kenneth StuartCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA 98109, USA.ORCID 0000-0002-4064-9758
Lanying ZengDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Silvi RouskinDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA.
Nicholas J SavillInstitute of Immunology and Infection Research, University of Edinburgh, Edinburgh EH9 3FL, UK.
Achim SchnauferInstitute of Immunology and Infection Research, University of Edinburgh, Edinburgh EH9 3FL, UK.ORCID 0000-0003-2132-5560
Xiuren ZhangDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Jorge Cruz-ReyesDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0003-0545-1508
Texas A&M University · USInfectious Disease Research Institute · USUniversity of Edinburgh · GBHarvard University · USUniversity of Washington · US

Funding

MITOCHONDRIAL DNA OF NORMAL AND MUTANT TRYPANOSOMESR01AI014102 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI KENNETH D STUART · 1985 to 2026
$20.9M
NIAID NIH HHS R01 AI014102
6 · The paper itself

Abstract

U-insertion/deletion (U-indel) RNA editing in trypanosome mitochondria is directed by guide RNAs (gRNAs). This editing may developmentally control respiration in bloodstream forms (BSF) and insect procyclic forms (PCF). Holo-editosomes include the accessory RNA Editing Substrate Binding Complex (RESC) and RNA Editing Helicase 2 Complex (REH2C), but the specific proteins controlling differential editing remain unknown. Also, RNA editing appears highly error prone because most U-indels do not match the canonical pattern. However, despite extensive non-canonical editing of unknown functions, accurate canonical editing is required for normal cell growth. In PCF, REH2C controls editing fidelity in RESC-bound mRNAs. Here, we report that KREH2, a REH2C-associated helicase, developmentally controls programmed non-canonical editing, including an abundant 3' element in ATPase subunit 6 (A6) mRNA. The 3' element sequence is directed by a proposed novel regulatory gRNA. In PCF, KREH2 RNAi-knockdown up-regulates the 3' element, which establishes a stable structure hindering element removal by canonical initiator-gRNA-directed editing. In BSF, KREH2-knockdown does not up-regulate the 3' element but reduces its high abundance. Thus, KREH2 differentially controls extensive non-canonical editing and associated RNA structure via a novel regulatory gRNA, potentially hijacking factors as a 'molecular sponge'. Furthermore, this gRNA is bifunctional, serving in canonical CR4 mRNA editing whilst installing a structural element in A6 mRNA.

Indexed as

TrypanosomaTrypanosoma brucei bruceiRNARNA HelicasesRNA, MessengerRNA, ProtozoanRNARNA HelicasesRNA, MessengerRNA, Protozoan

Identifiers

PMID37246647
PMCPMC10359474
OpenAlexW4378640217

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.