Evidence map›Paper›PMID 37243898›Full record

ArticleThe Plant journal : for cell and molecular biology2023

ELONGATED HYPOCOTYL5 (HY5) and HY5 HOMOLOGUE (HYH) maintain shade avoidance suppression in UV-B.

Ashutosh Sharma, Ashley J Pridgeon, Wei Liu, Francisca Segers, Bhavana Sharma, Gareth I Jenkins, Keara A Franklin

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Identification of Key Differentially Expressed Genes inInternational journal of molecular sciences · 2025
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
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  8. Review
  9. NO and HInternational journal of molecular sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ashutosh SharmaSchool of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, BS8 1TQ, UK.
Ashley J PridgeonSchool of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, BS8 1TQ, UK.
Wei LiuSchool of Molecular Biosciences, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK.
Francisca SegersSchool of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, BS8 1TQ, UK.
Bhavana SharmaSchool of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, BS8 1TQ, UK.
Gareth I JenkinsSchool of Molecular Biosciences, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK.ORCID 0000-0002-1855-4875
Keara A FranklinSchool of Biological Sciences, Life Sciences Building, University of Bristol, Bristol, BS8 1TQ, UK.ORCID 0000-0002-1859-640X
University of Bristol · GBSami Shamoon College of Engineering · ILUniversity of Glasgow · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M008711/1Biotechnology and Biological Sciences Research Council BB/R002045/1
6 · The paper itself

Abstract

Reductions in red to far-red ratio (R:FR) provide plants with an unambiguous signal of vegetational shade and are monitored by phytochrome photoreceptors. Plants integrate this information with other environmental cues to determine the proximity and density of encroaching vegetation. Shade-sensitive species respond to reductions in R:FR by initiating a suite of developmental adaptations termed shade avoidance. These include the elongation of stems to facilitate light foraging. Hypocotyl elongation is driven by increased auxin biosynthesis promoted by PHYTOCHROME INTERACTING FACTORs (PIF) 4, 5 and 7. UV-B perceived by the UV RESISTANCE LOCUS 8 (UVR8) photoreceptor rapidly inhibits shade avoidance, in part by suppressing PIF4/5 transcript accumulation and destabilising PIF4/5 protein. Here, we show that longer-term inhibition of shade avoidance is sustained by ELONGATED HYPOCOTYL 5 (HY5) and HY5 HOMOLOGUE (HYH), which regulate transcriptional reprogramming of genes involved in hormone signalling and cell wall modification. HY5 and HYH are elevated in UV-B and suppress the expression of XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE (XTH) genes involved in cell wall loosening. They additionally increase expression GA2-OXIDASE1 (GA2ox1) and GA2ox2, encoding gibberellin catabolism enzymes that act redundantly to stabilise the PIF-inhibiting DELLA proteins. UVR8 therefore regulates temporally distinct signalling pathways to first rapidly inhibit and subsequently maintain suppression of shade avoidance following UV-B exposure.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeBasic-Leucine Zipper Transcription FactorsGene Expression Regulation, PlantHypocotylPlantsSignal TransductionArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsHY5 protein, ArabidopsisPhytochromeArabidopsis thalianaDELLAgibberellinHY5HYHshade avoidanceUV-BUVR8

Identifiers

PMID37243898
PMCPMC10953383
OpenAlexW4378549358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.